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b
a Dep. of Crop Science, North Carolina State Univ., Raleigh, NC 27695
b Pioneer Hi-Bred Italia, Via Giuseppina 39, Malagnino, Cremona 26030 Italy
c USDA-ARS; North Carolina State Univ., Raleigh, NC 27695
d Dep. of Plant Pathology, North Carolina State Univ., Raleigh, NC 27695
* Corresponding author (lmiranda{at}uga.edu).
| ABSTRACT |
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Abbreviations: LOD, decimal logarithm of odds PCR, polymerase chain reaction RAPD, random amplified polymorphic DNA
b
a Dep. of Crop Science, North Carolina State Univ., Raleigh, NC 27695
b Pioneer Hi-Bred Italia, Via Giuseppina 39, Malagnino, Cremona 26030 Italy
c USDA-ARS; North Carolina State Univ., Raleigh, NC 27695
d Dep. of Plant Pathology, North Carolina State Univ., Raleigh, NC 27695
* Corresponding author (lmiranda{at}uga.edu).
Powdery mildew of wheat (Triticum aestivum L.) is a major fungal disease caused by Blumeria graminis DC f. sp. tritici. A microsatellite linkage map was developed for the T. monococcum-derived powdery mildew resistant gene present in the North Carolina germplasm line NCBGT96A6 (NCA6). Genetic analysis of F2-derived lines from the cross NCA6 x Saluda indicated a single gene controlled powdery mildew resistance. Four microsatellite markers linked to the NCA6 Pm gene mapped to chromosome 7AL. The most likely order was Xcfa2123-0.9 cM–Xbarc121-1.7 cM resistance gene/Xcfa2019-3.0 cM-Xgwm332. A detached-leaf test indicated the disease reaction response of the NCA6 Pm gene was different from the five known alleles at the Pm1 locus on 7AL. Deletion interval mapping showed a large physical to genetic distance ratio for these microsatellite marker loci. This may be due to suppressed recombination between the introgressed T. monococcum segment and the homologous region of the T. aestivum cultivar Saluda. Our results suggested that the NCA6 Pm gene is likely a novel source of resistance to powdery mildew but additional allelism studies are needed to establish the relationship between this locus and the other known Pm loci on 7AL.
Abbreviations: LOD, decimal logarithm of odds PCR, polymerase chain reaction RAPD, random amplified polymorphic DNA
| INTRODUCTION |
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Several major genes can be deployed simultaneously using cultivar mixtures (Mundt, 2002), isolines with different resistance genes (Zhou et al., 2005) or by pyramiding different major genes into a single cultivar (Liu et al., 2000). These strategies can be applied more efficiently with the use of molecular markers that tag and identify disease resistance genes. Microsatellites offer several advantages among the different types of molecular markers: they are codominant, highly polymorphic, generally chromosome specific and more amenable to automatization than other marker systems (Gupta et al., 1999; Langridge et al., 2001).
Diploid and tetraploid relatives of hexaploid wheat (2n = 6x = 42; genomes AABBDD) are commonly used sources of resistance to pests and diseases. The diploid wheat T. monococcum (2n = 2x = 14; genome AmAm) has proven to be a valuable source of disease resistance genes for leaf rust (Puccinia triticina Eriks) (Hussein et al., 1997; Anker et al., 2001) and stem rust (Puccinia graminis f.sp. tritici) (The, 1973; McIntosh et al., 1984).
Yao et al. (2007) reported the presence of two different powdery mildew resistance genes in the T. monococcum accessions TA2033 and M80. These genes, designated Mlm2033 and Mlm80, were both mapped to chromosome 7AL and, based on their linkage maps, they are likely to be allelic or closely linked to Pm1.
Among the designated powdery mildew resistance genes only the Pm1b allele from the cultivar MocZlatka (Hsam et al., 1998) and Pm25 from the North Carolina germplasm line NC96BGTA5 (Shi et al., 1998; Murphy et al., 1999) have been reported as being transferred from T. monococcum into common wheat. Pm1 was mapped to chromosome 7AL by Sears and Briggle (1969) and microsatellite markers linked to this locus were identified by Singrün et al. (2003). Shi et al. (1998) mapped Pm25 to chromosome 1AS and identified random amplified polymorphic DNA (RAPD) markers linked to this locus.
The North Carolina germplasm lines NC96BGTA4 and NC96BGTA6 also have T. monococcum as their source of resistance to powdery mildew (Murphy et al., 1999). Srni
et al. (2005) characterized the powdery mildew resistance gene in NC96BGTA4 but due to its chromosomal location on 7AL, additional allelism studies are needed to differentiate this locus from the Pm1 complex. In this study we report the genetic characterization and microsatellite linkage mapping of the powdery mildew resistance gene present in NC96BGTA6.
| MATERIALS AND METHODS |
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Greenhouse Disease Evaluations
The F1 plants grown in the greenhouse were resistant to powdery mildew, indicating that powdery mildew resistance in NCA6 is a dominant trait. Ninety-nine F2:3 families from NCA6 x Saluda were evaluated for reaction to powdery mildew in 2003. Ten seeds per family were planted in two 10-cm pots, each of them with five seeds. Pots were randomly distributed on a greenhouse bench. One pot containing Saluda and one pot containing NCA6 were included at 10 pot intervals as susceptible and resistant controls. The potting mix consisted of Metro-Mix 200 (Scotts-Sierra Horticultural Products Co., Marysville, OH), soil and sand (50:40:10) ratio, supplemented with 3 g of a slow release 14-14-14 (N-P-K) fertilizer per pot. The temperature was maintained between 20 and 24°C and natural light was supplemented with artificial high intensity 1000 W discharge lights.
The inoculum source was field grown Saluda plants infected with Blumeria gramininis DC f. sp. tritici that were dug at the Cunningham Research and Education Center, Kinston, NC. The inoculum was maintained and propagated on Saluda plants under greenhouse conditions. Plants were inoculated 20 to 30 d after planting at Feekes growth stage 1.3 to 2 (Large, 1954) by shaking conidiospores from infected plants onto their leaves. Disease reactions were recorded 15 to 20 d after inoculation (Feekes growth stage 3–4) following the rating scale developed by Leath and Heun (1990). In this scale: 0 = immune, no visible signs of infection; 1 to 3 = resistant, increasing from (i) flecks with no necrosis to (ii) necrosis to (iii) chlorosis, while the amount of mycelium went from none to a detectable amount; 4 to 6 = intermediate reaction with chlorotic areas decreasing in amount while mycelium and conidia production increased from slight to moderate; 7 to 9 = susceptible with increasing amount, size and density of mycelium and conidia to a fully compatible reaction. Phenotypic classes were assigned by comparing the disease reactions of the 10 individual plants within each F2-derived family with the Saluda and NCA6 reactions. Families for which all plants had a reaction similar to NCA6 were classified as homozygous resistant and as homozygous susceptible if all reactions were similar to Saluda. Families that had resistant and susceptible plants were included in the segregating class.
Field Disease Evaluations
One hundred twenty one F2:3 families from NCA6 x Saluda were planted at Kinston, in October 2002. All lines included in the greenhouse evaluations were included in the field evaluations. Forty to sixty seeds per family were planted in a 1.2-m row. Rows were spaced 30.5 cm apart. The NCA6 and Saluda rows were included at 40 plot intervals as controls. Irrigation, fertilization, and other agronomic practices followed standard management practices for North Carolina (Weisz, 2000). The experiment was surrounded by a 1.2-m Saluda border to promote homogeneous disease spread. Disease ratings were recorded at the end of March, when plants were at Feekes Growth stage 9 to 10.1. Flag minus two leaves were rated using the scale of Leath and Heun (1990) previously described for the greenhouse test. Plots were visually screened to determine if all plants were within the NCA6 (resistant) or Saluda (susceptible) score ranges or if the plot had plants within both ranges (segregating).
A second field trial during the 2003–2004 season included only the 66 F2:4 families that were classified as either homozygous resistant or homozygous susceptible in the F2:3 generation.
Differential Disease Response to Blumeria graminis f. sp. tritici Isolates
A detached-leaf test was conducted to test for differences in disease reaction among NCA6 and the five Pm1 alleles (Pm1a-e). The Pm1 lines used were Axminster (Pm1a), MocZlatka (Pm1b), M1N (Pm1c), T. spelta (Pm1d), and Virest (Pm1e). Cultivars Chancellor and Saluda were used as susceptible controls. These lines were evaluated for their disease reaction using 14 B. graminis f. sp. tritici isolates originated from mildew samples collected in different locations in the eastern United States. The isolates were designated: A4/AG11-L, Yuma, Sturdy2KPm5, 101a2, Asosan, Arapahoe, E314, Trego, W72-27, #8, 85063, Flat-7-11, 169-1b and AB9-10.
All isolates were maintained and propagated on 60- x 15-mm Petri dishes filled with 50 mg L–1 benzimidazole-amended 6% agar containing 2.5-cm leaf segments of Chancellor that were obtained from 10- to 15-d-old seedlings. Plates were placed in a growth chamber and maintained at 18°C, 85% relative humidity and a photoperiod of 12 h.
Leaf segments from all the lines being tested were cultured on Petri dishes under the same conditions previously described and were inoculated using Chancellor leaf segments infected with each of the different isolates, such that each plate was inoculated with a single isolate. Three replicate plates were inoculated with each isolate. Disease reactions were recorded 7 to 8 d after inoculation, using the 0 to 9 scale previously described.
The disease reaction of NCA6 was also compared to the powdery mildew resistant germplasm line NC99BGTAG11 in a separate detached-leaf test conducted under the same conditions previously described but with four replicates and including only the following isolates: Yuma, Sturdy2KPm5, 101a2, Asosan, Arapahoe, E314, Trego, W72-27, #8, 85063, Flat-7-11 and 169-1b.
Microsatellite Markers Analysis
Genomic DNA was extracted from leaf tissue samples of F2 plants following the procedure described by Stein et al. (2001). Wheat microsatellite primers evenly distributed across the A genome were synthesized according to the sequences published in the GrainGenes database (http://wheat.pw.usda.gov), modifying all forward primers to include the M13 sequence (CACGACGTTGTAAAACGAC-) at the 5' end for labeling purposes (Schuelke 2000; Rampling et al., 2001). The polymerase chain reaction (PCR) protocols, separation of PCR products and fragment size calling were as described by Miranda et al. (2006).
Primer pairs that were polymorphic between resistant and susceptible parents were used for bulked segregant analysis (Michelmore et al., 1991). Resistant and susceptible bulks were made by pooling equal amounts of DNA from 10 lines phenotypically scored as homozygous resistant and 10 lines phenotypically scored as homozygous susceptible.
Chromosomal Assignment
Chromosomal location of the linked microsatellite markers was confirmed using Chinese Spring nullitetrasomics: Nullisomic7A-tetra7D (N7AT7D) and ditelisomics: ditelo 7AS (Dt7AS) and ditelo 7AL (Dt7AL) lines (kindly provided by The Wheat Genetics Resource Centre, Kansas State University). Genomic DNA from NCA6, euploid Chinese Spring and the nullitetrasomic and ditelosomic lines of the putatively assigned chromosome were used to perform PCR reactions with the microsatellite markers linked the powdery mildew resistance locus.
The chromosomal breakpoint interval was determined for the microsatellite markers flanking the NCA6 powdery mildew resistance gene using deletion lines 7AL1-0.39, 7AL10-0.49, 7AL17-0.71, 7AL21-0.74, 7AL16-0.86, and 7AL20-0.89 (this nomenclature describes the chromosome arm carrying the deletion—the arbitrary line number designation—percentage of the arm present). These deletion lines are all homozygous terminal deletions previously described by Endo and Gill (1996).
Data Analysis
Deviations of observed data from theoretically expected segregation ratios were tested using chi-squared (
2) tests for goodness-of-fit. Linkage analysis was performed using MAPMAKER/Exp version 3.0b (Lincoln et al., 1993). Map distances were determined using the Kosambi mapping function (Kosambi, 1944) and loci were ordered using the sequence and compare commands, with a decimal logarithm of odds (LOD) threshold score
3.0.
| RESULTS |
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2 test value of 0.76 (P = 0.68) was obtained when testing for a 1:2:1 phenotypic ratio in the F2 generation, indicating monogenically inherited disease resistance (Table 1
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2004 evaluation: Sixty-six F2:4 lines from the NCA6 x Saluda population that were categorized either as homozygous susceptible or homozygous resistant were included in the 2004 experiment. There was complete agreement in phenotypic classes for all lines in both years.
Differential Disease Response to Blumeria graminis f. sp. tritici Isolates
The disease reaction responses observed in the detached-leaf test indicated the NCA6 Pm gene was different from the five designated Pm1 alleles (Table 2
). Unlike NCA6, NC99BGTAG11 was resistant to isolates Sturdy2KPm5, Asosan, and Arapahoe (data not shown).
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3 from this most likely order; in four of them Xcfa2123 and Xgwm332 flanked the NCA6 Pm gene. The most likely order of the region between Xcfa2123 and Xbarc121 is inverted compared to the physical map (Fig. 4
), but two other orders with LOD scores of 3.4 from the most likely order placed Xbarc121 proximal to Xcfa2123.
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Chromosomal Assignment
Marker loci linked to NCA6 were present in euploid Chinese Spring and ditelosomic 7AL but were absent in Nulli7A-Tetra7D and ditelosomic 7AS. Mapping distances among the microsatellite markers linked to the NCA6 powdery mildew resistance gene were not in good agreement with published SSR linkage maps, therefore sub-arm localization of the microsatellite markers was performed using 7AL deletion lines. Xbarc121 was located within the 0.49 to 0.71 interval, Xcfa2123 was in the 0.74 to 0.86 interval and Xgwm332 and Xcfa2019 mapped to the distal 0.11 end of 7AL (Fig. 4).
| DISCUSSION |
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The mapping distances among the microsatellite markers linked to the NCA6 Pm gene in this experiment were considerably less than the distances previously reported on microsatellite linkage maps (http://wheat.pw.usda.gov/). The microsatellite linkage map for the NCA6 Pm gene constituted an interval of <6 cM (Fig. 2) and a physical distance of at least 20% (Fig. 4) of the long arm of chromosome 7A. This low genetic to physical distance ratio could be explained by the presence of a relatively large segment introgressed from T. monococcum with suppressed recombination with T. aestivum. Lack of recombination could make locating the NCA6 powdery mildew resistance gene within a smaller physical interval a difficult task.
The order of the microsatellite markers Xcfa2123 and Xbarc121 was also in disagreement with the physical mapping, but discrepancies between genetic and physical maps have been previously reported (Sourdille et al., 2004), particularly in proximal regions and when there is little recombination. These two markers were separated by a distance of only 0.9 cM and were the most proximal loci in the NCA6 linkage map. Despite the unresolved order between Xcfa2123 and Xbarc121, both the physical and the genetic map indicate that these two marker loci are proximal to the NCA6 Pm gene and Xgwm332 is distal.
Marker Xgwm332 was mapped 17.7 cM proximal to Pm1e (Singrün et al., 2003) and 32.8 cM proximal to Pm1a (Neu et al., 2002). Because we mapped Xgwm332 3 cM distal to the NCA6 Pm gene, the distance between this Pm locus and Pm1 should be at least 20 cM (Fig. 2). Also, considering that recombination is likely to be reduced by the alien T. monococcum segment, additional backcross generations to the recurrent parent Saluda could increase the genetic distance between the NCA6 Pm locus and Pm1.
Marker Xgwm344 is the closest reported microsatellite linked to Pm1 (0.9 cM) and is null for Pm1a, Pm1b, Pm1d and Pm1e (Stepien et al., 2004). This marker locus was monomorphic between NCA6 and Saluda but polymorphic between NCA6 and T. monococcum accession PI 427772, indicating that the allele at this locus in NCA6 is derived from Saluda.
The powdery mildew resistance genes in the North Carolina germplasm lines NC96BGTA4 and NC99BGTAG11 are also located on chromosome 7AL (Srni
et al., 2005). The disease reaction response of NCA6 differs from both NC96BGTA4 (Murphy et al., 1999) and NC99BGTAG11 (our results). The source of powdery mildew resistance in NC96BGTA4 was the T. monococcum accession PI 221414 and the donor of the NC99BGTAG11 Pm gene was the T. timopheevii subsp. armeniacum accession PI 427315 (Murphy et al., 1999, 2002). The linkage maps for NC96BGTA4 and NC99BGTAG11 (Srni
et al., 2005) suggested that the resistance genes in these germplasms are distal to the NCA6 Pm gene (Fig. 3).
The 7AL linkage group also includes the T. monococcum Pm genes Mlm2033 and Mlm80 (Yao et al., 2007). The linkage maps developed for these two loci indicated they are allelic or tightly linked to Pm1, thereby distal to the NCA6 Pm gene. Microsatellite marker Xcfa2019 co-segregated with the NCA6 Pm gene and was mapped 46.1 cM proximal to Mlm2033 and 30.6 cM proximal to Mlm80 (Fig. 2).
All the previous cross-references to published linkage maps for Pm genes on chromosome 7AL and the distinctive virulence profile of NCA6 indicate that this germplasm line has novel powdery mildew resistance specificity and is likely to be a novel Pm locus in hexaploid wheat.
| ACKNOWLEDGMENTS |
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| NOTES |
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Received for publication January 28, 2007.
| REFERENCES |
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, G., J.P. Murphy, J.H. Lyerly, S. Leath, and D.S. Marshall. 2005. Inheritance and chromosomal assignment of powdery mildew resistance genes in two winter wheat germplasm lines. Crop Sci. 45:1578–1586.
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