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a USDA-ARS National Small Grains Germplasm Research Facility, 1691 S. 2700 W., Aberdeen, ID 83211
b USDA-ARS Western Regional Research Center, 800 Buchanan Street, Albany, CA 94710
c Dep. of Plant Sciences, University of California, Davis, CA 95616
d USDA, ARS, KSARC, 2413 E. Hwy 83, Weslaco, TX 78596
e Desert Research and Extension Center, University of California, El Centro, CA 92243
* Corresponding author (pbregit{at}uidaho.edu)
| ABSTRACT |
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Abbreviations: SCV, somaclonal variation HMW, high molecular weight HMW-GS, high molecular weight glutenin subunits
| INTRODUCTION |
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Commonly used techniques for asexual manipulation of cereal crops, such as in vitro selection or DNA delivery via particle bombardment (Weeks et al., 1993; Wan and Lemaux, 1994; Kumar et al., 2004) or Agrobacterium tumefaciensmediated transfer (Cheng et al., 1997; Tingay et al., 1997), require manipulation of cells grown in vitro. The in vitro environment often induces multiple heritable epigenetic and genetic changes, that is, somaclonal variation (SCV) (Larkin and Scowcroft, 1981; Karp, 1994; Olhoft and Phillips, 1999; Kaeppler et al., 2000).
Field studies of transgenic and nontransgenic tissue culturederived cereal plants have documented reductions in agronomic performance that would significantly impact their use in breeding programs. These studies have also identified tissue culturederived lines with performance similar to their wild-type parent. Examples include studies of regenerated barley (see Bregitzer et al. [2002] and other studies cited therein) and wheat (Hanson et al., 1994; Barro et al., 2002; Zhou et al., 2003). Furthermore, studies of barley (Hordeum vulgare L.), oat (Avena sativa L.), and rice (Oryza sativa L.) have shown that the transformation process generates variability over and above that produced by the in vitro processes alone (Schuh et al., 1993; Bregitzer et al., 1998; Choi et al., 2000a, 2000b, 2001).
Several studies have examined the extent to which transgene expression, and not SCV, is responsible for observed phenotypic variability. Reported effects of transgene expression range from severe stunting and phenotypic abnormalities in nuclear tobacco transformants expressing trehalose (Lee et al., 2003), to slight but detectable performance reductions both from SCV and the expression of a heat stable ß-glucanase in barley (Horvath et al., 2001), to undetectable effects either of transgene expression or SCV in transgenic wheat lines encoding 5-enolpyruvylshikimate-3-phosphate synthase (Zhou et al., 2003) or high molecular weight (HMW) glutenin transgenes (Barro et al., 2002). In the latter study, no differences were detected between wheat lines constitutively expressing uidA and bar and an endosperm-expressed HMW glutenin transgene, segregants containing only the HMW glutenin transgene, two nontransformed regenerants, and the two original parents from which these lines were derived. Thus, the literature has shown that transgenic plant performance can be, but is not necessarily, affected both by SCV and/or the presence of a transgene.
Designing reasonable breeding objectives and efficient breeding schemes for the use of transgenic parents requires knowledge of their characteristics. The probability of recovering lines with altered performance for unselected traits will affect decisions on the number of individual transgenic lines that should be screened to identify suitable parents, the nature of the breeding process that should be used, and the potential utility of transgenic cultivars in the marketplace. If the effects of SCV or transgene expression are small or occur in only a small portion of the population, identifying a suitable line may be merely a matter of screening a sufficiently large number of transgenic lines. On the other hand, widespread existence of SCV in a transgenic population would require hybridization and selection to separate variant alleles from the transgene, a process that might require multiple cycles of hybridization and selection within large populations. Horvath et al. (2001) showed both the potential and the limitations of the latter approach. They were able to improve the yield and 1000-kernel weight of transgenic barley lines expressing a heat stable ß-glucanase by hybridization and selection for agronomic performance. However, null segregants from these crosses had higher 1000-kernel weight than transgenic segregants, suggesting that some of the performance reductions were attributable to the expression of the transgene and not SCV. If performance reductions are caused by the expression of the transgene itself and if such reductions are severe, then the goal of producing a cultivar for standard agricultural marketsin the absence of premium payments based on the value of the transgene-encoded traitmay not be feasible.
The study reported here was conducted as part of a two-phase evaluation of the agronomic performance and grain quality of transgenic wheat lines containing bar only or bar plus transgenes encoding native or recombinant HMW-GS. The selectable marker bar encodes phosphinothricin acetyl transferase, enabling herbicide-based identification of transgenic cells and plants using phosphinothricin (glufosinate) (De Block et al., 1987). HMW-GS are seed storage proteins found only in endosperm tissue of wheat and they typically comprise 5 to 10% of flour protein (Shewry et al., 1992). This paper reports the agronomic performance of 54 such transgenic linesas measured in replicated small-plot trials grown in California and Idahorelative to the performance of the wild-type parental control, and relative to 10 transgene-null plant populations that segregated from the first and second generation of nine of the transgenic events.
| MATERIALS AND METHODS |
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To enable herbicide-based selection of transformants, plasmids pAHC20 (Christensen and Quail, 1996) or pUBI:BAR (Cornejo et al., 1993), were introduced in conjunction with one or two of the HMW-GS plasmids described above. Both of the former plasmids contain the herbicide resistance gene bar (De Block et al., 1987) under control of the maize Ubi1 promoter and first intron. Transgenic wheat lines containing only the pUBI:BAR plasmid (with no changes in HMW-GS content) are called BAR in this report.
Generation and Identification of Primary Transformants
The wheat lines that are the subject of this paper resulted from 15 different bombardment experiments. Transformation was achieved by particle bombardment of immature embryos of the hard white spring wheat Bobwhite using methods described previously (Weeks et al., 1993; Okubara et al., 2002). One or two HMW-GS encoding plasmids in two- or three-fold molar excess were co-bombarded with one of the selection plasmids, pAHC20 or pUBI:BAR. Stable transformants were selected by regeneration in the presence of 3 mg L1 bialaphos {4-[hydroxy(methyl)phosphinoyl]-L-homoalanyl-L-alanyl-L-alanine} (Okubara et al., 2002). Seeds of resistant plants were screened for expression of the HMW-GS-encoding plasmids by SDS-PAGE of endosperm proteins as described previously (Blechl and Anderson, 1996) or by using Nu-PAGE Novex Bis-Tris 4 to 12% gradient gels and MES SDS running buffer, as described by the manufacturer (Invitrogen, Carlsbad, CA).
Establishment of Transgenic Wheat Lines
Each line selected for study originated from a unique transformation event, except for LongDx5-E tall and short, two lines derived from a unique event by phenotypic selection in the field (see Results). SDS-PAGE of endosperm proteins was used to identify homozygous progeny of plants that showed altered expression of HMW-GS as a result of the HMW-GS transgene(s), based on the observation of stable and uniform expression alterations among individual plants within a line for two consecutive generations. In early generations, lines were advanced by single seed descent. The final derivation of lines was made by bulking seed from the 20 to 25 progeny of homozygous plants expressing the transgene. Nine lines were derived in the T2 generation, 26 in the T3, 10 in the T4, one in the T5, two in the T6, and one in the T10 generation. Further generation advances were made via bulks as necessary to produce sufficient seed for testing. In a similar manner, four lines containing only bar were established as marker geneonly controls; these lines were derived in the T2, T3, and T4 generations. The presence of bar was inferred from the ability of 3- to 4-wk-old embryos to precociously germinate on media containing 3 mg L1 bialaphos (Weeks et al., 1993) and confirmed by PCR, as described in the next section.
Seed for the 2002 field trials was hand harvested from single row plots grown at the Aberdeen location in 2000 and 2001. At this point, the transgenic HMW-GS and bar lines planted in the 2002 field trial had undergone between 3 and 12 sexual self-pollination generations after regeneration; most were in the T5 to T9 generations. The same seed was also used to plant single-row increase plots in 2002, which were hand harvested and used to plant the 2003 trials.
Establishment of Null (Nontransgenic) Segregant Control Lines
For nine different transgenic events, DNA was isolated from T1 or T2 plants as described by Dellaporta et al. (1983) and screened by polymerase chain reaction (PCR) for the absence of bar and HMW-GS transgenes, as described by Okubara et al. (2002). To distinguish between endogenous and transgenic HMW-GS sequences, the following primers were designed to amplify a 375-bp fragment that spans the junction between the wheat genomic sequences downstream of the Glu-D11 gene and the pBluescript plasmid backbone in the HMW-GS plasmids: forward primer 5'CGACGCTGATTTGGTAC3' and reverse primer 5'CCCTATCTCGGTCTATTC3'. Amplification by Taq polymerase (PerkinElmer, Foster City, California or Promega Corporation, Madison, WI) was conducted in an MJ Research PTC-200 (Waltham, MA) Peltier thermal cycler for 36 cycles with an annealing temperature of 52°C. Primers used for the detection of bar amplified a 446-bp fragment that spans the junction of the Ubi1 promoter and the bar coding region: forward primer 5'CCTGCCTTCATACGCTATTTATTTGC3' and reverse primer 5'CTTCAGCAGGTGGGTGTAGAGCGTG3'. Amplification was conducted as above except the annealing temperature was 62°C. Seeds from 10 to 12 transgene-negative plants segregating from each initial transformation event were harvested, pooled, and planted in the greenhouse for increase. Greenhouse seedling assays for sensitivity to glufosinateammonium applied as a spray were conducted as additional confirmation of the absence of bar. The progeny of these plants were grown at the Aberdeen field location in 2001 for increase, and tested in 2002 replicated trials as T0derived T3 or T1derived T4 populations. This seed was also used to plant single-row increase plots in 2002, which were hand harvested and used to plant the 2003 trials. The lines are named by the event from which they were derived followed by "null."
Agronomic Evaluations
All transgenic and null segregant lines and the wild-type Bobwhite control were grown under irrigation using prevailing agronomic practices for small plot evaluations of spring wheat at Aberdeen, ID, and Davis, CA (2002 and 2003), and at El Centro, CA (2002). Planting dates for Aberdeen were 8 Apr. 2002 and 1 Apr. 2003; for Davis, 24 Jan. 2002 and 7 Feb. 2003; and for El Centro, 15 Jan. 2002. All locations utilized a randomized complete block experimental design with four replicates. Data was collected for all replicates, except for protein contents at Aberdeen in 2003 where two composite samples (reps 1 and 2, 3, and 4) were analyzed per line. Grain was milled to pass through a 1.0-mm screen and protein determinations were made using a Dickey John Instalab 600 NIR analyzer (Auburn, IL) as specified by the manufacturer.
At Aberdeen, plots consisted of seven rows 2.4 m in length on 17.8-cm centers. Plots were arranged in multiple ranges of side-by-side plots, with approximately 36 cm between adjacent plots and with 1.2-m alleyways separating each range. Similar field designs were employed at Davis and El Centro, except that plot lengths varied from approximately 1.6 to 2.4 m at Davis, and the alleyways at El Centro were 0.9 m. Soil tests at all three locations showed sufficient levels of P and K. At Aberdeen preplant soil N levels were adequate, so no additional application of fertilizer was made. At Davis, N was applied in the form of ammonium nitrate at, respectively for 2002 and 2003, 112 kg ha1 preplant + 112 kg ha1 at tillering, and 45 kg ha1 preplant + 112 kg ha1 at tillering. At El Centro, urea (30 kg ha1) and P2O5 (30 kg ha1) were applied preplant, and anhydrous ammonia (50 kg ha1) was applied just before heading. Herbicide applications were made as follows: Aberdeen, Bronate (3,5-dibromo-4-hydroxybenzonitrile plus 2-methyl-4-chlorophenoxyacetic acid) at 0.3 L ha1; Davis, MCPA (2-methyl-4-chlorophenoxyacetic acid) at 0.2 L ha1; El Centro, Buctril (3,5-dibromo-4-hydroxybenzonitrile) 0.3 L ha1; and Carbyne (M-chloro, 4-chloro-2-butynyl ester) at 0.3 L ha1. Sprinkler irrigation was provided as needed based on crop usage and weather conditions. Plots were harvested using small-plot combines.
Statistical Analyses
All data were analyzed using SAS v. 8.0 Proc GLM (SAS Institute Inc., Cary, NC). For the Aberdeen and Davis locations, the model used to examine line performance data included year, rep(year), line, and line x year as sources of variance. Rep(year), year, and line x year were considered random. Line x year was used as the error term for all line comparisons. For the El Centro location, where there was only 1 yr of data, the model included rep and line as sources of variance. To identify lines with differences from the Bobwhite wild-type control, comparisons of least-squared means of line performance were examined via the Dunnett's test. Specific comparisons of individual lines were made via single degree of freedom contrasts constructed using the lsmeans/pdiff option.
| RESULTS |
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In most of the lines, accumulation of the transgene-encoded HMW-GS was additive with that of the native HMW-GS (Fig. 2A, 2B). Ten of the transgenic lines exhibited some degree of transgene-mediated cosuppression as evidenced by decreased accumulation of all the native HMW-GS (examples in Fig. 2C). Clear differences in the expression levels were evident among lines transformed with the same construct. The examples (Fig. 2A, 2B) illustrate typical ranges from low to high expressers for various transgene-encoded HMW-GSs. In general, the larger subunits showed lower accumulation than the smaller subunits. For example, the HMW-GS levels were similar for the highest expressing LongDx5 line (Lane 4 of Fig. 2B) and the lowest expressing ShortDx5 line (Lane 5 of Fig. 2B).
Visual observations during field growth revealed that the majority of the transgenic wheat lines were similar to Bobwhite, although often their appearance was less uniform. The nonuniformity was generally difficult to quantify and not always noticeable in all plots of a given line. Notable exceptions included the lines LongDx5-E, BAR-D, and Dx5-L. Line BAR-D had a distinctly yellow-green appearance relative to the darker green of Bobwhite; the difference was particularly noticeable before anthesis. The leaves of line Dx5-L were relatively narrow and often twisted. In addition, during the seed increases before the tests reported here, line LongDx5-E was clearly segregating for short and tall plants, and selections of multiple short and tall variants of this line were made. These selections were bulked and tested as separate entries in the trials in Davis and Aberdeen, where they were designated "LongDx5-E short" and "LongDx5-E tall." There was insufficient seed to evaluate these lines at the El Centro location. Several of the lines were significantly different from Bobwhite for heading date or plant height at one or more locations (see below).
Initial examinations of the data suggested that there were significant line by location interactions. Preliminary analyses of variance also showed line by location interactions to be a significant (P < 0.05) source of variability. Therefore, the data from each location were analyzed separately as described in the Materials and Methods. Line x year interactions were not significant at either the Aberdeen or Davis locations; the line means for each location are presented in Tables 1
3.
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More examples of substantial deviation from Bobwhite performance were noted for yield, test weight, and 100-kernel weight. Still, lines showing significant differences from Bobwhite were in the minority. For these traits measured at Aberdeen and Davis (Tables 1 and 2, respectively), all lines with significant differences from the control showed reduced performance. Furthermore, despite the relatively few instances of significant differences between individual HMW-GS transgenic lines and Bobwhite, their average performance as a group showed a trend toward lower performance (see yield summaries in Table 4). Although the five lines with significantly increased grain protein at Aberdeen also had significant reductions in yield, other lines with decreased yield did not have significant increases in grain protein, and no general relationship between grain protein content and grain yield could be detected. At El Centro, all lines that were significantly different from Bobwhite for yield showed reductions (Table 3). However, when considered as a group, the yields of transgenic lines showed a relatively normal distribution about the mean of Bobwhite, and their mean yield was more similar to Bobwhite than at the other locations (Table 4). There was an upward trend for test weight relative to Bobwhite, and four of the five lines significantly different in test weight from Bobwhite had higher values (Table 3).
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To assess the effect of SCV in the absence of transgenes, various comparisons were made of null segregant lines, transgenic lines, and Bobwhite. Since SCV might be only partially heritable, leading to increased performance during generation advance, the data were examined for relationships between the grain yield and the generation of line derivation and/or line testing, and none were found (data not shown). A more powerful approach to determine the impact of SCV was to assess the performance of null segregant controls relative to Bobwhite. Because of their early generation derivations, each null segregant line was relatively heterogeneous and the genetic variability caused by SCV present in their original T0 parent was well represented and expected to be manifested as performance reductions relative to the Bobwhite control. This requires the assumptionwhich is reasonable based on previous studies of SCVthat SCV will consist of predominantly random genetic changes that are more likely to reduce than they are to increase performance. As seen for the UBI:BAR lines, none of the null segregants showed differences from Bobwhite for any measured trait either individually (Tables 1
3) or as a group (data not shown), as examined by Dunnett's comparisons (P < 0.05). Because the heterogeneity of the null segregant lines, it is possible that significant SCV-caused performance reductions could have occurred in a small percentage of plants within any given null segregant line, a situation which might not reduce the overall performance of that line enough to lead to significant yield reductions. Similar (but slightly less strong) overall trends were observed as for the UBI:BAR lines: lower average performance at Aberdeen (96% of Bobwhite) and at Davis (88% of Bobwhite), but not at El Centro (103% of Bobwhite) (Table 4). Overall, except for the short variant of Long-Dx5E, these data indicate that SCV had little impact on agronomic performance.
The data were examined to evaluate the effects of particular HMW-GS transgenes and/or their expression levels on agronomic traits. An examination of the mean performance of lines for each of the HMW-GS transgenes showed that there may have been an association with some of the transgenes and reduced yield (Table 4). However, perusal of the data (Tables 1
3) clearly shows large line x plasmid interactions, and divergent performance among lines for each plasmid class (except for plasmid Ax2* for which there was only one tested line). One possible exception may have been for transgenic lines containing the hybrid glutenin transgene, which showed relatively poor mean yields and few instances of lines ranked in the top 50% for yield. Even so, only two lines containing the hybrid glutenin transgene showed consistently significant differences from Bobwhite at all locations. These data suggest that unidentified genetic changes that were associated with specific transformation events, rather than the expression of specific HMW-GS transgenes, were the primary cause of reductions in agronomic performance.
This conclusion is further supported by HMW-GS expression data, which generally showed no consistent relationships between yield (based on means of all locations and years) and the extent of HMW-GS alterations. For example, in comparisons among lines transformed with the same plasmid, lines with relatively larger HMW-GS deviations from Bobwhite such as Dx5-J (Fig. 2A, lane 5) and Long Dx5-G (Fig. 2B, lane 4) had mean yields (6117 and 6150 kg ha1, respectively) that were more similar to Bobwhite (6301 kg ha1) than were lines with relatively smaller HMW-GS alterations such as Dx5-G (Fig. 2A, lane 4; 6069 kg ha1) and Long Dx5-C (Fig. 2B, lane 3; 4924 kg ha1). For the Dx5 example, neither of the cited lines showed significant yield differences from Bobwhite despite divergent HMW-GS expression patterns, a situation that was seen in other cases such as Short Dx5-A vs. Short Dx5-D (Fig. 2B, lanes 5 and 6). Most importantly, however, was that the lines that were shown to have significant yield reductions did not have a consistent pattern of alterations in HMW-GS expression. For instance, the lowest yielding lines (Fig. 3, Tables 1
3) includes those transformed with five different classes of HMW-GS genes. Comparisons of the banding patterns shown in Fig. 3 with those shown in Fig. 2 show that these lines share HMW-GS expression patterns with lines with higher yields (e.g., both low and high yielding lines show cosuppression) or that they do not have highest additive accumulation of transgenic HWM-GS for their respective plasmid class (e.g., Hybrid-C, Dx5+Dy10-E). Furthermore, the short and tall lines selected from Long-Dx5E, which had very different performance characteristics, had identical HMW-GS compositions (data not shown). The low-yielding lines Short Dx5-F and Dx5+Dy10-C each contained a seed protein band with an unexpected size (lanes 5 and 7, respectively, of Fig. 3), but whether or not these novel proteins are related to the yield reductions is unknown.
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| DISCUSSION |
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Of the traits measured, yield showed the greatest variability among lines, as might be expected because the expression of this trait depends on many others. As a group, the transgenic lines tended to yield less at Aberdeen and Davis than the nontransgenic controls (Bobwhite and null segregants). In contrast, at the El Centro location, the yields of the transgenic lines were more normally distributed about the mean of Bobwhite. Nevertheless, the relative rankings for the performance of most of the lines were similar at all three locations. For the few lines that showed extreme line-rank x environment interactions for yield, their performance was not significantly different from Bobwhite at any of the locations, and thus one explanation for these apparent interactions may simply be experimental error. Alternatively, the source of these interactions may trace, at least in part, to transformation-induced genomic variability, either as a result of SCV or of transgene integration and/or expression. If the effects of such alterations were slight, their phenotypic manifestations might be negligible when the plants were grown under highly favorable conditions. El Centro may have been such an environment: every line had higher yields at El Centro than at either of the other two locations.
Five lines exhibited significant reductions in yield at all locations, and a sixth that was tested only at two locations showed substantial yield reductions at both locations, compared to their nontransformed parent. The sources of these differences could be SCV associated with the transformation process, the presence of bar and/or HMW-GS transgenes, and/or the expression of either or both types of transgenes. The performance of 10 null segregant lines and four lines containing only bar were not significantly different from Bobwhite, indicating that neither SCV nor the expression of bar was a significant source of variability. With the possible exception of the hybrid HMW-GS, no consistent associations could be found between agronomic performance and the type of transgenic HMW-GS plasmid nor with the level of HMW-GS expression alterations. Total grain protein content also appeared unrelated to agronomic performance, except for five low-yielding lines that had elevated protein contents. Such elevations may be related to the overall vigor of the plants, rather than a consequence of the HMW-GS alterations. Tissue culture-derived elevations in grain protein concentrations coupled with severe yield reductions have been observed for barley (Bregitzer et al., 1995). Thus, the data indicate that changes in agronomic performance likely trace primarily to other sources that are specific to individual transformation events (e.g., pleiotropic effects of integration site differences).
The tendency toward slightly reduced performance of transgenic lines overall, and the presence of lines with essentially unchanged performance, is in agreement with previous studies of transgenic wheat (Hanson et al., 1994; Barro et al., 2002; Zhou et al., 2003). The lack of evidence for significant SCV in the tested wheat lines stands in contrast with our experience with transgenic barley, where the phenotypic manifestations of SCV such as delayed maturity and yield reductions have been severe (Bregitzer et al., 1998, 2002). It is likely SCV occurs in bread wheat at a similar rate as has been shown for other species, but the polyploid, genetically redundant wheat genome likely buffers the effect and masks the presence of SCV. Thus, although it would be prudent to include hybridization and selection steps in the process of developing transgenic wheat cultivars, simple selection within transgenic populations may also be successful.
In conclusion, significant changes to the HMW-GS proteins were made via biolistic transformation techniques, and many of the transgenic lines performed well under a variety of environmental conditions. Thus, it would appear that significant alterations in the expression of major proteins involved with breadmaking quality are compatible with the development of agronomically competitive cultivars.
| ACKNOWLEDGMENTS |
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| NOTES |
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Received for publication October 11, 2005.
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