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Department of Crop and Soil Science, Michigan State University, Room 286 Plant and Soil Sciences Building, East Lansing, MI, USA 48824
* Corresponding author (bughrara{at}msu.edu).
| ABSTRACT |
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| INTRODUCTION |
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Much of the work in classification of Agrostis is predominantly based on morphological and cytological features (Bjorkman, 1960). Linnaeus grouped Agrostis on the basis of the presence or absence of awns, panicle shape and color, and orientation of culms and roots. The basic chromosome number of Agrostis is x = 7 and differences in ploidy level often determine species boundaries. Diploid species (2n = 2x = 14) are A. alpina Leyss., A. elegans Walt., A. canina L., A. flaccida Hack., and A. nebulosa Boiss. & Reut. Most bentgrass species such as A. capillaris L., A. castellana Boiss. & Reut., A. palustris Huds., and A. stolonifera L. are tetraploids with 2n = 4x = 28 (Brede and Sellman, 2001). Species such as A. castellana, A. gigantea R., A. alba L., A. exarata Trin., A. clavata Trin., A. diegoensis Vasey, and A. hallii Vasey are known to exist in tetraploid and hexaploid forms (2n = 6x = 42). In a wide collection of A. gigantea, Jones (1955a) only found hexaploids. Because of the outcrossing nature of bentgrass, ploidy levels need to be identified. Bonos et al. (1999) used laser flow cytometry as a rapid option to validate the number of chromosomes of certain species of Agrostis. Current significant species in the USA are velvet bentgrass, A. canina; colonial bentgrass, A. capillaris or A. tenuis L.; dryland or highland bentgrass, A. castellana; creeping bentgrass, A. stolonifera; red top bentgrass, A. gigantea; and Idaho bentgrass, A. idahoensis Nash. Creeping bentgrass is the premier turfgrass species for closely mowed golf course putting greens (Funk, 1998).
Intra- and interspecific hybridization is possible in Agrostis; however, very few genetic studies have explained the contribution of diploids to polyploids and their relationship. Hybridization experiments by Davies (1953), using germplasm from UK, showed that hybrids of A. stolonifera x A. gigantea were among the easiest to produce and indicated some degree of homology between the two polyploid species. Bivalent formation during meiosis in hybrids between A. capillaris x A. vinealis Schreb. established A. capillaris to be a segmental allotetraploid and from hybrids of A. stolonifera x A. canina that A. stolonifera was a strict allotetraploid (Jones, 1955a). The use of interspecific hybrids of A. tenuis, A. stolonifera, and A. gigantea and their offspring helped decode the genome constitution in Agrostis. Jones (1955b) suggested that if A. tenuis or A. capillaris was A1A1A2A2 and A. stolonifera was A2A2A3A3, then A. gigantea would be A1A1A2A2A3A3. The A2 genomes of the two species were not confirmed to be absolutely identical. Creeping bentgrass, A. stolonifera was also found to hybridize with ticklegrass, A. scabra Willd. and spike bentgrass, A. exarata (Welsh et al., 1987). A. scabra was found to hybridize with A. trinii Turcz. (Probatova and Kharkevich, 1983). Warnke et al. (1998) used isozyme analysis to study allotetraploid inheritance in creeping bentgrass and found strong genetic evidence for disomic rather than tetrasomic inheritance.
Little is known about bentgrass genetic relationships and there is much confusion regarding assignment to groups and classification. Early effort to use morphological characters in classification resulted in many synonymous species. A. stolonifera was listed as being synonymous with A. alba var. palustris Huds., A. alba var. stolonifera (L.) Sm., A. stolonifera var. compacta Hart., A. stolonifera var. palustris (Huds.) Farw., and A. maritima Lam. (Biota of North America Program, BONAP Poaceae Listing; Plant Gene Resources of Canada (GRIN-CA). Agrostis gigantea is synonymous with three other species (BONAP Poaceae Listing) and may include subspecies on the basis of rhizome and shoot development and the morphology of the spikelet (Dihoru, 1980). Species A. trinii was found synonymous with A. vinealis spp. trinii (Tzvelev, 1971) and A. flacidda spp. trinii (Koyama, 1987), while Soreng et al. (2002) taxonomy listed A. vinealis as being synonymous with A. canina spp. vinealis (Turcz.) Hult. Kurchenko (1979) listed A. trinii and A. canina both from Russia as different species on the basis of morphoanalytical characters and behavior in their natural environments. Differences in phenotypic expressions are oftentimes the result of environmental fluctuations. DNA fingerprinting is considered a more stable and reliable technique to explore genetic diversity and relationships.
A wide variety of DNA marker technologies have been used to differentiate bentgrass cultivars and species such as isozyme (Yamamoto and Duich, 1994; Warnke et al., 1997), random amplified polymorphic DNA (RAPD) (Golembiewski et al., 1997, Scheef et al., 2003) and restriction fragment length polymorphism (RFLP) (Caceres et al., 2000). These techniques are limited by the low levels of polymorphism at the intra- and interspecific levels. A more powerful tool in fingerprinting for biodiversity studies over other PCR based techniques is by amplified fragment length polymorphism (AFLP) analysis (Zabeau and Vos, 1993; Vos et al. 1995). AFLPs have been successfully used to study genetic diversity in crops like rice (Oryza sativa L.) (Zhu et al., 1998), cotton (Gossypium spp.) (Abdalla et al., 2001) and common bean (Phaseolus vulgaris L.) (Tohme et al., 1996). The high frequency of identifiable polymorphism is useful for distinguishing among genotypes, detecting linkages and for mapping loci in turfgrasses. Zhang et al. (1999) used AFLPs to differentiate bermudagrass (Cynodon spp.) genotypes and determine genetic relationships among genotypes. In addition, they showed that the use of fluorescence-based detection of AFLPs has improved both fragment scoring and data handling. Ebina et al. (1999) constructed an AFLP-based genome map of zoysiagrass (Zoysia spp.) and developed a linkage map of QTLs associated with some major traits. AFLPs have not been used to study bentgrass. Understanding bentgrass diversity would facilitate the efficient use of germplasm accessions to combine the favorable agronomic and disease resistance traits to produce superior cultivars.
The objectives of this research were to study the genetic diversity between forty Plant Introduction (PI) accessions comprising 14 species of Agrostis from 20 countries and determine the genetic relationships among the species based on AFLP profiles.
| MATERIALS AND METHODS |
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Data Analyses
Gels were visualized by means of Gene ImagIR 4.0 (Scanalytics, Inc. VA). Each informative polymorphic band was scored manually as 1 for presence and 0 for absence. Analyses were done using Numerical Taxonomy and Multivariate Analysis System, NTSYS v.2.1 (Rohlf, 1993). Genetic similarities based on Jaccard's coefficients (Jaccard, 1908) were calculated among all possible pairs using the SIMQUAL option and ordered in a similarity matrix. The similarity matrix was run on Sequential, Agglomerative, Hierarchical and Nested clustering, SAHN (Sneath and Sokal, 1973) using Unweighted Pair Group Method with Arithmetic Mean (UPGMA) as an option (Sokal and Michener, 1958). Cophenetic correlation was calculated to measure goodness of fit. Principal component analysis (PCA) was run using SYSTAT to identify the number of groups based on Eigen vectors. The TREE module of NTSYS v.2.1 was used to produce the dendrogram and cluster groupings (Rohlf, 2000).
| RESULTS AND DISCUSSION |
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The most robust primer combination with the highest number of polymorphism was E-ACA/M-CAG, whereas the lowest number was observed with E-AGC/M-CGG. Approximately 12% of the markers were specific for individual Agrostis species. Specific AFLP markers were found for A. lachnantha, A. vinealis, A. scabra, A. munroana, A. stolonifera/A. palustris, A. transcaspica and A. hygrometrica, whereas no specific markers were detected for A. canina, A. capillaris, A. castellana, A. mongolica and A. gigantea. Data suggest the possibility of developing probes from specific markers to discriminate effectively between some species in the future.
Diversity between Accessions and Species
Gaps in phylogenetic information of Agrostis have resulted from too few hybridization studies, difficulty in obtaining old botanical records, and inconsistencies in morphological characterizations, i.e., synonyms, subspecies, and re-classification of some species. New phenotypes with different number of chromosomes and distinct characteristics have been given new species names (Probatova and Karkevich, 1983). Another possible source of uncertainty results from spontaneous natural hybrids where lineage and ploidy levels are not known. In this study, assessment of number of chromosomes of the 14 species of Agrostis from the literature and conducted chromosome analyses confirmed the wide range in ploidy levels (2n = 14, 21, 42) (Table 1). Physical and cytological examinations of the different species showed that ploidy level may not be indicative of plant size in bentgrass. In the germplasm collection, diploid A. canina was much smaller compared to another diploid A. transcaspica, which in turn had wider and longer leaves and was larger than a triploid, A. munroana. Investigations at the molecular level may provide a clearer understanding of the diversity and relationships in bentgrasses.
In this research, four hundred AFLP markers from five selective primer combinations were used to compare 40 bentgrass accessions. Pairwise similarity coefficients (sc) were computed based on shared and unique amplification products using UPGMA (Table 3). On the basis of similarity coefficients, the closest pair would be PI235440 (Switzerland) and PI235541 (Sweden) at 0.98. Both accessions belonged to A. palustris (creeping bentgrass), had the same number of chromosomes, and were found in Europe. The difference between the two PI lines may be due to minimal within-species allelic variation probably resulting from recombination events. Data in Table 3 also showed that the most dissimilar pair would be PI230235, A. stolonifera from Iran and PI477045, A. hygrometrica from Uruguay. The similarity coefficient was only 0.58 indicating large variability in the genomic constitution. Iran and Uruguay are found geographically in distant hemispheres that separated A. stolonifera and A. hygrometrica and AFLP analysis suggested the two species had the least homology, genetic exchange, or introduction among the accessions studied.
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Group 2 consisted only of PI234681, A. scabra (Canada), and AFLP analysis showed that the similarity with A. canina was only 0.74. Morphologically, A. scabra was also a nonrhizomatous bunch type grass like A. canina but the two species differed in ploidy levels. Dissimilarity may come from the hexaploid nature and more diverse genetic composition of the species in Group 2. Known as ticklegrass or hairgrass, A. scabra Willd., a delicate species was listed as being synonymous with winter bentgrass (A. hyemalis Tuck.) but differed in flowering time (Lawrence, 1986).
Group 3 consisted of three subgroups. Subgroup A consisted of the seven accessions of A. capillaris (colonial bentgrass) from seven countries. This indicated that the seven allotetraploid accessions were similar and/or may have originated from common diploid ancestors. Visual classification between colonial and highland bentgrass was difficult. Hubbard (1984) separated them by flower color, ligule size and growth habit. Two accessions of A. capillaris (USA) cv. Highland and cv. Exeter were reclassified as A. castellana (Hubbard, 1984; Shildrick, 1976; Brilman, 2001). Steiner and Lupold (1978) supported the suggestion that A. capillaris cv. Highland should belong to A. castellana on the basis of the percentage distribution of the form of palea apex, the presence and angle of basal hairs and awn types. In this study, AFLP analysis of PI469217 Highland and PI578528 Exeter showed that though they contained a small number of specific bands present only in A. castellana, they clustered more with the A. capillaris group. There is no information whether the plant introductions were seeded in open or isolated places during seed increase. Cross contamination at any time may add to the taxonomic variation. Yamamoto and Duich (1994) could not distinguish Highland and Exeter from the other 10 colonial bentgrasses using phosphoglucoisomerase, glutamate oxalotransaminase, peroxidase, and topoisomerase isozymes. Difference at the Pox-2 locus was observed (Yamamoto and Duich 1994) but peroxidase isozymes are often unstable and dependent on stress conditions. Subgroup B consisted of all PI accessions of A. castellana from Spain and Portugal with no distinction as to groupings based on origin. The two subgroups, A and B, may share common diploid species progenitors and may be related with A. capillaris from Germany and Italy.
Subgroup C consisted of PI598462 A. trinii (Russian Federation) and PI443051 A. gigantea (USA). Classification of A. trinii Turcz. has been unclear and listed as being synonymous to A. canina spp. trinii (Turcz.) Hulten (Soreng et al., 2002). Cluster analysis however showed A. trinii to be dissimilar to A. canina (sc = 0.70 to 0.73). Skolovskaya (1938) described A. trinii in Siberia and Orient as having both diploid and tetraploid forms. The diploid form of A. trinii may have been recognized as subspecies of A. canina (Brilman, 2002). PI598462 A. trinii was known to be a tetraploid and appeared different phenotypically from A. vinealis, an autotetraploid form of A. canina. A. trinii (Russian Federation) could be an allopolyploid with one chromosome set different from A. canina and A. vinealis, thus forming separate groups. The other member of this subgroup, A. gigantea (US) surprisingly was not grouped with the A. gigantea (Turkey). Hexaploid A. gigantea genomic constitution of A1A1A2A2A3A3 may have consisted of A1A1 from A. canina, with the A2A2A3A3 probably from A. stolonifera or A1A1A2A2 from A. capillaris (Jones, 1955b). AFLP data supported both possibilities. The two PI lines of A. gigantea may possibly have different chromosome sets but share the common A1A1 genome. Based on the clustering, PI443051 (USA) may have the A1A1A2A2 from A. capillaris while PI383584 (Turkey) may have the A2A2A3A3 from A. stolonifera. Agrostis gigantea (Turkey) may have a second genomic constitution originating from another species. In this study, A. transcaspica (Former USSR) was found to be diploid and clustered closest with the A. gigantea (Turkey). This indicated the possibility that A. transcaspica was closely related to this species and may be the source for the A3A3 genome in A. gigantea (Turkey). This relationship would be interesting to examine in future interspecific hybridization and cytogenetic studies.
Group 4 consisted mainly of the creeping bentgrass (A. palustris and A. stolonifera), A. gigantea (Turkey), A. mongolica, and A. transcaspica. There has been considerable taxonomic confusion regarding creeping bentgrass and whether they should also be A. stolonifera with subspecies palustris, spp. stolonifera or spp. gigantea. The genetic similarity coefficient between PI accessions in this group ranged from 0.82 to 0.95. Genetic dissimilarity computed from 1 - sc x 100% (Zhang et al., 1999) ranged from 5 to 18%. Turf breeders believe A. palustris (USA) have originated from and frequently outcrossed with materials from Europe. AFLP data supported this idea and results showed that USA creeping bentgrasses may share some genetic similarity with those from Switzerland and Sweden. The most divergent in A. stolonifera would be from Turkey, Iran, and the former USSR as opposed to those originating from other parts of Europe. No separation of groups for A. palustris and A. stolonifera was observed on the basis of AFLP, but they differed slightly from A. gigantea. The difference may be due to the third chromosome set of hexaploid A. gigantea. Caceres et al. (2000) used RFLP markers to distinguish four creeping bentgrass A. stolonifera cultivars from A. capillaris Highland. AFLP data supported that PI accessions of A. stolonifera from different parts of the globe were in one group and differed from A. capillaris (Group 3, Subgroup A). Species A. stolonifera also shared slight similarities with A. mongolica (sc = 0.76 to 0.87) and A. transcaspica (sc = 0.73 to 0.80). PI362190 A. mongolica plant type was also stoloniferous and chromosome analysis showed that the bentgrass from Eastern Europe was also a tetraploid. UPGMA analysis grouped A. mongolica (Mongolia) closest to A. stolonifera (Russia). Because Mongolia and Russia are geographically adjacent, these countries may have similar environmental conditions favorable to both species. The fourth species in Group 4, which comprised mostly of stoloniferous bentgrasses, was A. transcaspica, PI283174 (Former USSR). Physical examination showed A. transcaspica also to be creeping but differed in leaf characteristics. The species has wider (618 mm) dark green, thick leaves with pointed tips. Soreng et al. (2002) has listed A. transcaspica Litv. as being synonymous to A. stolonifera spp. transcaspica (Litv.) Tzvelev. AFLP clustering and similarity coefficients indicated that A. transcaspica, a diploid may have contributed to the tetraploid or hexaploid creeping bentgrass genome.
Group 5 consisted of A. lachnantha N. (Ethiopia and South Africa). The African bentgrasses were morphologically distinct from the other bentgrass species. PI195917 (Ethiopia) bentgrasses were shorter (10.225 cm) than PI299461 (South Africa, >25 cm). The latter also has fewer leaves, harder stalks, and produced very tall flowering panicles (>61 cm) in the greenhouse but were highly sterile. The chromosome number reported here differed from the listing of the Index to Plant Chromosome number (IPCN) with gametophytic count (n = 21) and sporophytic 2n = 28. Chromosome analysis of 2n = 21 may suggest intra- or intercrossing variation during seed increase. The two PI accessions of A. lachnantha has sc = 0.94 on the basis of AFLP analysis. Eleven specific AFLP markers were found that could distinguish A. lachnantha species from the other 13 species.
Group 6 consisted only of PI230236 A. munroana (Iran). Background information about A. munroana Aitch. & Hemsl. was minimal and was earlier referred to as Calamagrostis munroana (Aitch. & Hemsl.) Boiss. in 1884 (Soreng et al., 2002). Chromosome analysis of plants of PI230236 showed 2n = 21 which confirmed earlier reports (Gohil and Koul, 1986; Mouinuddin et al., 1994). Physical analysis of the mature triploid plant showed a short plant stature (5.115.2cm) with fine (23 mm width), flat, soft, normal green leaves. Species A. munroana was observed to be a bunch type bentgrass and early flowering with the florets openly branched. A. munroana plants were morphologically distinct from triploids of A. lachnantha. Their triploid genome constitutions may be largely unlike and AFLP results showed sc = 0.61, thus forming separate groups.
Group 7 was the most genetically distant from the thirteen other species studied and included A. hygrometrica (Uruguay). Seven specific AFLP markers were found for this species. A. hygrometrica Nees. has nine synonyms in genus Agrostis or Bromidium (Soreng et al., 2002). Plant materials from PI477045 were low growing, bunch-type grasses with hard, lengthy flowering panicles. AFLP analysis showed that bentgrass germplasm from Uruguay (South America) formed a separate group from other bentgrasses of Europe, Asia or North America. Distinct ecological conditions among continents and unique germplasm pools from which the A. hygrometrica may intercross would differentiate the accessions.
Assessment of genetic diversity in germplasm collections from several geographic locations by means of AFLP markers has been conducted for Morus germplasm (Sharma et al., 2000) and the Triticeae tribe (Monte et al., 1993). Positive correlations were found for cluster groupings and geographic distances. Results in this study indicated that geographically adjacent countries like Spain and Portugal have bentgrass accessions which also clustered together as in Group 3, Subgroup B and bentgrass accessions from distant locations (Iran vs. Uruguay) were in separate groups with low similarity coefficients. Possibilities of genetic introductions may have occurred with migration, selection and breeding among the colonial, highland and creeping bentgrasses from Europe and USA. Local environmental adaptation may play a significant role in Agrostis diversity.
AFLP analysis revealed its usefulness for assessing germplasm collection for possible duplications. It may also indicate where incorrect species determinations would be in the GRIN system or germplasm collection. The 400 polymorphic markers from five chosen primer combinations showed the high level of diversity between the Agrostis germplasm and distinguished the seven groups. Differences in ploidy levels did not give ambiguous results in scoring as highly polymorphic, repetitive and specific bands were found. The high cophenetic correlation showed the goodness of fit of the similarity indices. The dendrogram showed the relationships between A. canina with A. vinealis but not with A. trinii. Cluster analysis also showed that two hexaploid A. gigantea from different geographic sources (USA and Turkey) were not grouped together, possibly because of different chromosome sets. A possible diploid progenitor would be A. transcaspica. The percentage genetic dissimilarity among creeping bentgrasses indicated considerable potential for the improvement of turf. Turfgrass breeders may develop superior cultivars either by crosses with germplasm accessions from the same species or among varying species. Important traits from other Agrostis species can be introduced to cultivated bentgrasses and AFLP analysis would be a useful tool to monitor introgression and molecular tagging. By means of specific amplified products, sequence characterized amplified primers may be developed to distinguish genetically the different bentgrass species in the future. AFLP analysis may be used in identifying bentgrass genotypes and clusters, constructing core collections and screening for duplicate, or misclassified accessions in germplasm collections.
| ACKNOWLEDGMENTS |
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Received for publication August 31, 2002.
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