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Crop Science 41:611-619 (2001)
© 2001 Crop Science Society of America

SYMPOSIUM ON GENETIC SOLUTIONS TO FUSARIUM HEAD BLIGHT IN WHEAT AND BARLEY

Host Plant Resistance Genes for Fusarium Head Blight

Mapping and Manipulation with Molecular Markers

F.L. Kolb*a, G-H. Baib, G.J. Muehlbauerc, J.A. Andersonc, K.P. Smithc and G. Fedakd

a Dep. of Crop Sciences, Univ. of Illinois, 1102 S. Goodwin Ave., Urbana, IL 61801
b Oklahoma State Univ., Dep. of Plant and Soil Sciences, Stillwater, OK 74078
c Dep. of Agronomy and Plant Genetics, Borlaug Hall, Univ. of Minnesota, St. Paul, MN 55108
d Agriculture and Agri-Food Canada, Bldg. 50, Central Experimental Farm, Ottawa ON, Canada K1A OC6

* Corresponding author (f-kolb{at}uiuc.edu)


    ABSTRACT
 TOP
 ABSTRACT
 INTRODUCTION
 Nature of the Inheritance...
 Molecular Markers and Maps
 Wheat FHB QTL Mapping
 Barley FHB QTL Mapping
 Do Wheat and Barley...
 Future Research
 REFERENCES
 
Fusarium head blight (FHB), caused by Fusarium graminearum Schwabe [teleomorph Gibberella zeae (Schwein.)], or scab, causes severe reductions in yield and quality of wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.). Evaluation of FHB resistance is laborious and subject to environmental influence; therefore, molecular markers for FHB resistance genes will greatly enhance selection for FHB resistance. This review seeks to summarize information on molecular markers associated with quantitative trait loci (QTL) for resistance to FHB in wheat and barley and the use of those markers for marker assisted selection. Our goal is to summarize the current state of knowledge on the genetics of FHB resistance, the map locations of QTL for FHB resistance, and the future directions and potential applications of this research. In wheat, five types of resistance have been described, and Type II resistance (expressed in Chinese wheat cultivar Sumai 3) is the easiest type to assess. Several research groups are developing molecular markers associated with genes for FHB resistance from Sumai 3, a widely used source of Type II resistance in wheat breeding programs worldwide. In four different populations, each having Sumai 3 or a derivative as one parent, one to four QTL have been identified that explain up to 63% of the variation in resistance. QTL were identified on chromosomes 3BS and 6BL in three or more populations. Recently, in barley, restriction fragment length polymorphism (RFLP) markers associated with genes for FHB resistance, deoxynivalenol (DON) accumulation, and kernel discoloration were identified on all seven chromosomes. Three regions, located on chromosomes 2, 3, and 5 were identified in several mapping populations. Comparing the QTL locations between wheat and barley shows that the barley chromosome 3 QTL is located in a syntenous region in wheat. The following areas of research on molecular markers associated with FHB resistance should be emphasized: (i) identifying and mapping better resistance sources in wheat and barley; (ii) validating QTL in additional populations; and (iii) developing markers that can be easily used in breeding programs and across populations.

Abbreviations: AFLP, amplified fragment length polymorphism • cM, centimorgan • FHB, Fusarium head blight • QTL, quantitative trait locus (or loci) • RAPD, random amplified polymorphic DNA • RFLP, restriction fragment length polymorphism • RIL, recombinant inbred line • SNP, single nucleotide polymorphism • SSR, single sequence repeat (or microsatellite) • STS, sequence tagged site


    INTRODUCTION
 TOP
 ABSTRACT
 INTRODUCTION
 Nature of the Inheritance...
 Molecular Markers and Maps
 Wheat FHB QTL Mapping
 Barley FHB QTL Mapping
 Do Wheat and Barley...
 Future Research
 REFERENCES
 
FUSARIUM HEAD BLIGHT, a widespread and destructive disease of wheat and barley, significantly reduces yield and quality. FHB is caused by several Fusarium species, but in the USA, FHB is caused primarily by Fusarium graminearum Schwabe [teleomorph = Gibberella zeae (Schwein.) Petch; synonym = G. saubinatti]. FHB causes significant economic losses in many wheat and barley producing regions throughout the world, and host-plant resistance is important in reducing losses due to FHB (Bai and Shaner, 1994; McMullen et al., 1997; Steffenson, 1998). Schroeder and Christensen (1963) reviewed early research on FHB resistance, and differences in cultivar resistance to FHB were identified many years ago (Bai and Shaner, 1994; Immer and Christensen, 1943). Bai and Shaner (1994) stated that Arthur first described differences in susceptibility to FHB among wheat cultivars in 1891. Phenotypic evaluation of FHB resistance requires significant time and resources (Bai and Shaner, 1994; Rudd et al., 2001; Campbell and Lipps, 1998), and the environment greatly influences expression of FHB resistance. Genotype x environment interaction further complicates the phenotypic evaluation of FHB resistance (Bai and Shaner, 1994; Groth et al., 1999). An important research objective is development of the capability to use molecular markers routinely to screen experimental breeding lines for FHB resistance. To be most effective for marker assisted selection, the markers should provide a rapid means of determining which breeding lines in a population carry alleles for FHB resistance.

To reach this major objective, several steps need to be accomplished. The first step is to identify the major QTL for FHB resistance and locate them to chromosomes. The second step is to confirm the magnitude and map position of the QTL. Markers can be used for selection without knowing their locations; however, to enhance our understanding of the genetics of resistance and to aid in finding better markers than those currently available, the locations of the QTL should be determined. The third step is to identify markers that are closely linked and flanking the QTL. While flanking markers require breeders to work with more markers, they are helpful in minimizing selection of lines in which recombination has occurred between the marker and the QTL. In addition, flanking markers greatly improve the efficiency of a backcrossing procedure (Young and Tanksley, 1989). Finally, to be most efficient, "user-friendly" markers should be developed.

This review seeks to describe the current literature and research on the use of molecular markers for QTL associated with resistance to FHB in wheat and barley. Our goal is to provide the current state of knowledge on the genetics of FHB resistance, the map locations of QTL for FHB resistance, the future directions of this research, and the potential applications.


    Nature of the Inheritance of Resistance to FHB
 TOP
 ABSTRACT
 INTRODUCTION
 Nature of the Inheritance...
 Molecular Markers and Maps
 Wheat FHB QTL Mapping
 Barley FHB QTL Mapping
 Do Wheat and Barley...
 Future Research
 REFERENCES
 
The expression of resistance to FHB in wheat and barley is complex. Five types of resistance have been proposed in wheat (Mesterhäzy, 1995). Type II resistance in wheat (resistance to spread of the fungus in the head) has been investigated more extensively than other types of resistance. In barley, two of the fives types have been described: Type I (resistance to initial infection) and Type II (resistance to spread of disease in the head). Most wheat breeding efforts have concentrated on Type II resistance, whereas in barley the emphasis has been on Type I resistance derived from diverse sources (Buerstmayr et al., 1999; Rudd et al. 2001). Many resistant sources being used in wheat trace back to the Chinese cultivar, Sumai 3. The expression of the disease, as well as the consequences of infection, also differ in wheat and barley. In barley, particularly malting barley, the primary concern is the accumulation of the mycotoxin deoxynivalenol (DON). Accumulation of mycotoxin is also a concern in wheat, but reductions in yield and test weight are also major concerns. Resistance to accumulation of DON would be very desirable, particularly in barley, but to date there is little evidence for it. Type II resistance has been identified in barley (Zhu et al, 1999), but its value is not clear (Capettini, 1999).

A critical factor that has confounded the attempts to quantify resistance and select for resistant genotypes is the correlation of resistance to other traits associated with inflorescence morphology. This has been particularly true in barley. By means of near-isogenic lines, traits such as late heading, tall plant height, lax spike, hulless kernel, and two-row spike have been associated with resistance (Steffenson et al., 1996). One concern is that the expression of these other traits can interfere with the accurate measurement of resistance. In addition, these traits may result in apparent resistance by increasing the probability that the host escapes infection by the pathogen rather than reducing disease by a physiological defense response in the host. Furthermore, if the trait correlated with resistance is undesirable (e.g., tall, lodging-susceptible plants), then it will be necessary to determine if the correlation is due to pleiotropy or tight linkage.

The complex expression of resistance to FHB is further reflected in its mode of inheritance. Different studies of FHB resistance in wheat have shown from two to six genes to be involved in FHB resistance. As early as 1955, Nakagawa (1955) suggested that at least three loci controlled FHB resistance. FHB resistance in Sumai 3 has been reported to be conditioned by three genes (Yao et al., 1997), but in populations used in some studies only two genes were segregating (Van Ginkel et al., 1996). In other studies, more than three genes were thought to be associated with FHB resistance (Yu, 1982). Frontana, a FHB resistant spring wheat cultivar, has either Type I, or Type I and Type II, resistance. In one study, FHB resistance in Frontana was reported to be controlled by three or more genes (Singh et al. 1995), but in another study it was shown that Frontana and Ning 7840 (derived from Sumai 3) each possess two unique dominant genes for FHB resistance (Van Ginkel et al. 1996).

Genes for FHB resistance in wheat have been reported to be located on many different chromosomes (Buerstmayr et al., 1999; Yao et al., 1997); 18 of the 21 wheat chromosomes have been reported to be involved in FHB resistance (Fedak et al., 1998). Only chromosomes 1A, 6A, and possibly 1D have not been reported to be associated with FHB resistance. Because there are many contradictory reports, many questions remain regarding the location of genes for FHB resistance. There are at least seven reasons for the differences in the literature on the location of FHB resistance genes. First, because FHB resistance is a quantitative trait we expect that several genes will be segregating in many crosses. Second, the number of genes segregating in these populations may vary depending upon genetic backgrounds and the magnitude of the difference in resistance between the two parents in each cross. Furthermore, the more susceptible parent in a cross can influence the number of genes detected because even fairly susceptible parents can contribute FHB resistance alleles (Buerstmayr et al., 1998; Waldron et al., 1999). Third, different research groups have studied different sources of resistance. Many groups have studied resistance derived from Sumai 3; however, Sumai 3 has been reported to be heterogenous (Waldron et al., 1999), and the Sumai 3 source used by different groups may differ. Some researchers have studied crosses made directly with Sumai 3, while others have studied populations in which a line derived from Sumai 3 (such as the "Ning" series of lines) was used as the resistant parent. Fourth, whereas most research groups have studied resistance to Fusarium graminearum, some studies have also been conducted on resistance to F. culmorum (Wm. G. Sm.) Sacc. (Buerstmayr et al., 1998; Snijders and Perkowski, 1989; Mesterhäzy, 1988). When genotypes have been evaluated for FHB resistance with more than one Fusarium species, the correlation between resistance ratings using different Fusarium species has been high (Miedaner, 1997),but use of different Fusarium species or different isolates of F. graminearum could contribute to differences among results from different studies. Fifth, whereas most genetic studies and molecular marker studies of FHB resistance in wheat have assessed primarily Type II resistance, genes for other types of FHB resistance may have been segregating in these populations and may confound the determination of the number of genes involved in FHB resistance. Sixth, variation in techniques employed for phenotypic evaluation and the environments in which evaluations were conducted can also contribute to differences in results. For example, studies conducted in a greenhouse with needle inoculation and assessing only Type II resistance may show different results from a field experiment. This is especially important for FHB evaluation in wheat because there are different types of resistance and spore germination, initiation of infection, and symptom spread within the head are all influenced by temperature and relative humidity. Low temperatures or lack of moisture may lead to low disease levels even in susceptible cultivars. For genetic studies and molecular mapping, accurate phenotypic evaluations are critical. Seventh, genotype x environment interactions are frequently large, and field nursery results can also differ over years (Groth et al., 1999). If there is a large amount of environmental variation in the phenotypic data, the estimated number of genes involved in resistance and the amount of variation explained by the detected QTL may not be accurate. Thus, repeated evaluation of a mapping population for FHB resistance is essential.


    Molecular Markers and Maps
 TOP
 ABSTRACT
 INTRODUCTION
 Nature of the Inheritance...
 Molecular Markers and Maps
 Wheat FHB QTL Mapping
 Barley FHB QTL Mapping
 Do Wheat and Barley...
 Future Research
 REFERENCES
 
Available Barley and Wheat Molecular Markers and Genetic Maps
. Well-developed barley genetic maps exist as the result of the efforts of numerous groups worldwide. These maps include: RFLP (about 3000 probes); amplified fragment length polymorphism (AFLP) (about 1000 markers); single sequence repeat, or microsatellite (SSR) (about 250 primer pairs); isozyme protein markers; and morphological markers (about 200 markers) [GRAINGENES database (http://wheat.pw.usda.gov/; verified December 1, 2000); Becker et al., 1995; Ellis et al., 1997; Graner et al., 1991; Heun et al., 1991; Kleinhofs, 1997; Kleinhofs et al., 1993; Waugh et al., 1997)]. In addition, these markers have been incorporated into bin maps (Kleinhofs and Graner, 1999) (http://barleygenomics.wsu.edu/; verified December 1, 2000). Numerous studies identifying QTL for malting quality, agronomic performance, and disease resistance have been conducted in barley (see Hayes et al., 1993; Tinker et al., 1996; Qi et al., 1998).

RFLP and SSR maps have been developed for wheat (Nelson et al., 1995a, b,c; Van Deynze et al., 1995; Dubcovsky et al., 1996; Marino et al., 1996; Boyko et al., 1999; Röder et al., 1998). The close relatedness of barley and wheat allow mapping RFLPs from either species in the other. Combining markers from barley, rye (Secale cereale L.), and other relatives of wheat provides more than 5000 RFLP markers, in addition to AFLP, SSR, morphological, and isozyme markers [McGuire and Qualset, 1997; GRAINGENES database (http://wheat.pw.usda.gov/)]. Almost 100 QTL controlling agronomic performance and disease resistance have been identified in different maps (see Campbell et al., 1999; Faris et al., 1997; Nelson et al., 1997; Waldron et al., 1999).


    Wheat FHB QTL Mapping
 TOP
 ABSTRACT
 INTRODUCTION
 Nature of the Inheritance...
 Molecular Markers and Maps
 Wheat FHB QTL Mapping
 Barley FHB QTL Mapping
 Do Wheat and Barley...
 Future Research
 REFERENCES
 
The number of published reports on molecular markers associated with FHB resistance is fairly small, but the number is expected to increase dramatically in the next few years. In wheat, random amplified polymorphic DNA (RAPDs), RFLPs, AFLPs, and SSRs associated with genes for FHB resistance have all been reported (Table 1). Bai (1995) reported RAPD markers associated with two loci for FHB resistance in a population of 133 recombinant inbred lines from the cross Ning 7840/Clark. Ning 7840 is derived from Sumai 3 and Clark is a susceptible soft red winter wheat cultivar. Ban (1997) reported on RAPD markers associated with two FHB resistance loci in 110 doubled haploid lines derived from Fukuhokomugi/Oligo Culm. Three of the markers were in one linkage group, and the fourth occurred in a separate group. Ban and Suenaga (1997)(1998) reported RAPD markers associated with a FHB resistance locus on 5AL. They reported that the FHB resistance locus on 5AL was linked to B1 (awn suppressor locus) in repulsion with a recombination value of 15.1 ± 3.3% in a Sumai 3/Gamenya doubled haploid population of 137 lines and 21.4 ± 4.3% in a Sumai 3/Emblem doubled haploid population of 73 lines.


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Table 1. A summary of DNA markers associated with FHB resistance in wheat.

 
There have been several reports of RFLPs associated with FHB resistance in wheat. K. Armstrong and D. Procunier (personal communication) identified an RFLP marker associated with a Sumai 3 gene for FHB resistance on chromosome 6B. Waldron et al. (1999) used RFLP markers to detect QTL for FHB resistance in five chromosome regions in a population of 112 recombinant inbred lines from the cross of Sumai 3/Stoa. RFLPs associated with resistance alleles from Sumai 3 were identified on chromosome 3BS and two regions of chromosome 6BS. In a Sumai 3/HY368 doubled haploid population, Fedak (unpublished data) confirmed that RFLP markers Xbcd907 and Xbcd1495 were linked to FHB resistance loci on 3BS and 6BS, respectively. Two QTL for FHB resistance were also identified on chromosomes 2AL and 4BL in Stoa, a moderately susceptible cultivar (Waldron et al., 1999). The identification of resistance alleles from both parents is not unexpected since transgressive segregation for FHB resistance has been reported (Singh et al. 1995; Buerstmayr et al., 1999). Waldron et al. (1999) assigned the gene designation Qfhs.ndsu-3B to a gene from Sumai 3 on chromosome 3B and Qfhs.ndsu-2A to a gene from Stoa on chromosome 2A. AFLPs associated with FHB resistance were also identified in the same population by the same researchers (Anderson et al., 1998). Some of the QTL for FHB resistance detected by AFLPs and RFLPs were also identified in a second population, ND2603/Butte 86 (127 recombinant inbred lines). The experimental line ND2603 is derived from a Sumai 3/Wheaton cross. An SSR (Xgwm533) on chromosome 3BS explained 25% of the variation in FHB resistance in the ND2603/Butte 86 population (Anderson et al., 1999). This research group has identified at least one RFLP, AFLP, and SSR that are linked to the same QTL for FHB resistance on the short arm of chromosome 3B. These results and the results of other research groups (Chen et al., 2000; Gupta et al., 2000; Zhou et al., 2000) indicate that chromosome 3BS carries a gene with a major effect for FHB resistance.

Bai et al. (1999a) identified 11 linked AFLPs associated with a major QTL for FHB resistance in a Ning 7840/Clark recombinant inbred line population (133 lines). This population was evaluated for FHB resistance by the needle inoculation technique in the greenhouse on F5, F6, F7, F8, and F10 plants. One QTL with a major effect explained from 23 to 53% of the variation in FHB resistance depending upon the generation. In further research with this population, two additional QTL associated with FHB resistance were identified (Bai et al. 1999b). Averaged over five generations evaluated in the greenhouse, the three QTL collectively explained about 63% of the variation in FHB resistance. Because this research was conducted in the greenhouse with inoculation, the variation assessed was associated only with Type II resistance. Also, because the evaluations were conducted in the greenhouse, environmental variation was smaller than would be expected in the field. If evaluations had been conducted in the field, the percentage of the variation associated with a QTL might have been lower. Research is in progress to assign these AFLP markers to linkage groups on the W7984/Opata M85 ITMI map.

SSR markers have been developed for wheat, and several research groups (Procunier et al., 1998; Anderson et al., 1999; Chen et al., 2000; Gupta et al., 2000; Zhou et al., 2000) have used SSRs (microsatellites) in conjunction with FHB resistance. Procunier et al. (1998) used SSRs in research with F1 pentaploids from a cross of Sumai 3 / DT486 (susceptible tetraploid) and tetraploid D chromosome addition lines. They used SSRs that were previously mapped to known D genome chromosomes and reported that the Sumai 3 FHB resistance genes are not located in the D genome. Otto et al. (1999) used a population of 83 recombinant inbred chromosome lines derived from a cross between Langdon and a disomic substitution line for chromosome 3A from Triticum dicoccoides (Koern. ex Asch. & Graebner) Aarons. They identified a QTL for FHB resistance on chromosome 3A. The SSR marker Xgwm2 was closely associated with FHB resistance and explained 38% of the phenotypic variation.

In summary, on the basis of published molecular marker information and genetic studies, chromosomes 5A, 3BS, and 6BS seem to be likely locations for FHB resistance genes from Sumai 3. In addition, 2AL, 3A, and 7A also appear to be involved in FHB resistance in wheat. Several groups are currently working on molecular markers for FHB resistance in wheat using a variety of populations. Information on location of QTL for FHB resistance should improve dramatically in the near future.


    Barley FHB QTL Mapping
 TOP
 ABSTRACT
 INTRODUCTION
 Nature of the Inheritance...
 Molecular Markers and Maps
 Wheat FHB QTL Mapping
 Barley FHB QTL Mapping
 Do Wheat and Barley...
 Future Research
 REFERENCES
 
Two recent studies in barley have identified QTL for FHB resistance on all seven chromosomes. Using a six-rowed barley population of 110 F4 derived lines, de la Peña et al. (1999) identified QTL on all chromosomes except chromosome 6, whereas Zhu et al. (1999) identified QTL on all chromosomes except chromosome 7 using a two-rowed population of 144 doubled haploid lines. In both studies, some of the FHB QTL mapped to the same location as QTL for other traits that were phenotypically correlated with FHB. The traits that were both phenotypically and genetically correlated with FHB resistance included: DON concentration, heading date, plant height, seeds/inflorescence, and lateral floret size. Further research will be necessary to determine if these coincident QTL are due to close linkage or pleiotropy. More recent work on a doubled haploid population derived from a cross between Chevron and the cultivar Stander has also identified QTL associated with FHB resistance (Ma et al., 2000). In addition to the traits mentioned above, this group found FHB QTL coincident with spike angle and kernel plumpness. They concluded that QTL on chromosomes 1H, 2H, and 4H may be the most useful for marker assisted selection. These three QTL are not associated with late heading or plant height.

Several QTL for FHB resistance in barley were identified in independent mapping efforts. On chromosome 2, Ksuf15 and MWG503 were associated with resistance in Chevron/M69 (110 F4 derived lines) and Gobernadora/CMB643 populations (144 doubled haploid lines), respectively. Both markers were not evaluated in both populations, but are 3 centimorgans (cM) apart on a consensus barley map (Qi et al., 1996). In the Chevron population, this QTL was only associated with FHB resistance, while in the Gobernadora/CMB643 population it was associated with resistance, lateral floret size, and seeds per inflorescence. The latter two traits were not measured in the Chevron/M69 population, so it is not possible to determine if the Chevron-derived resistance is associated with inflorescence morphology at this locus. Also on chromosome 2, the Chevron allele of the marker ABC306 was associated with resistance to DON accumulation, FHB resistance, and late heading in both the Chevron/M69 and Chevron/Stander populations. On chromosome 3, ABG713A and ABC261B were both associated with FHB resistance in the Chevron/M69 and Gobernadora/CMB643 populations, respectively. These markers are 7 cM apart on the consensus barley map (Qi et al., 1996). CDO395 (also on chromosome 3) was associated with FHB resistance in both the Chevron/M69 and Chevron/Stander populations. On chromosome 5, the marker ABG452 was associated with resistance to FHB and accumulation of DON in both the Chevron/M69 and Chevron/Stander populations. The identification of these QTL in independent mapping studies indicates that they are robust and may be useful in marker assisted breeding programs.

Several other mapping efforts to identify new or verify previously identified FHB QTL are in progress (Table 2). Several of the QTL regions identified in the Chevron/M69 population are being followed in populations created with Chevron/M69 progeny. These populations have less variability for traits correlated with FHB and may provide more unbiased estimates of the effects of alleles at FHB QTL. The barley FHB QTL studies published to date have involved only crosses within either the six-rowed or two-rowed barley gene pools. Two-rowed barley generally appears to have more resistance than six-rowed barley, and many of the sources of FHB resistance are two-rowed. Efforts to introgress resistance from two-rowed barley into six-rowed barley have met with limited success. The mapping population derived from the cross between Frederickson, a two-rowed resistance source, and Stander should help clarify the role of two-rowed/six-rowed spike morphology in FHB resistance.


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Table 2. Mapping populations for the study of FHB resistance in barley.

 

    Do Wheat and Barley FHB Resistance QTL Reside in Syntenous Chromosomal Locations?
 TOP
 ABSTRACT
 INTRODUCTION
 Nature of the Inheritance...
 Molecular Markers and Maps
 Wheat FHB QTL Mapping
 Barley FHB QTL Mapping
 Do Wheat and Barley...
 Future Research
 REFERENCES
 
Extensive mapping studies with molecular markers have shown that cereal genomes exhibit a high level of synteny (Moore, 1995; Paterson et al., 1995; Bennetzen and Freeling, 1993; Sherman et al., 1995; Saghai-Maroof et al., 1996; Korzun et al., 1997; Devos and Gale, 1997; Gale and Devos, 1998). That is, gene order and position is conserved from one species to another. In particular, the barley and wheat genomes appear to be highly syntenous (Dubcovsky et al., 1996). Examination at the sequence level has revealed considerable microsynteny among the grasses, but there are some exceptions (Bennetzen et al., 1998; Chen et al., 1997). In addition, it has been reported that some resistance gene analog loci are conserved in grass species and some are not (Collins et al., 1998; Gallego et al., 1998; Leister et al., 1998). In spite of the exceptions, one obvious question is: are the major FHB resistance QTL identified in barley and wheat located in syntenous locations in the genomes?

To determine if the FHB resistance QTL are located in syntenous locations, we focused our attention on the two major QTL that map to chromosomes 2 and 3 in wheat and barley. Examining the potential syntenous relationships between these two major FHB resistance QTL revealed that the chromosome 2 and 3BS QTL appear to lie in nonsyntenous and syntenous locations, respectively (Fig. 1; de la Peña et al., 1999; Waldron et al., 1999; Ma et al., 2000). The QTL on chromosome 3 is located in a region flanked by the RFLP markers bcd907 and abg471 in both wheat and barley, indicating that it lies in a syntenous location. In barley, this QTL has been identified in two independent mapping studies (de la Peña et al., 1999; Ma et al., 2000). In wheat, the chromosome 3 BS QTL is the major QTL identified to date, and it has been identified in mapping studies conducted by a number of research groups (Anderson et al., 1999; Chen et al., 2000; Gupta et al., 2000; Zhou et al., 2000). Whether or not these are orthologous genes contributing to resistance is not known. The QTL located on chromosome 2 in wheat and barley does not appear to exhibit synteny.



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Fig. 1. The barley and wheat chromosome 3 FHB resistance QTL are located in a syntenous region. This figure combines the results of four different mapping studies. The marker locations for the wheat chromosome 3BS map are based on the Sumai3/Stoa mapping population (Waldron et al., 1999). The marker locations for the barley chromosome 3HS map are based on the barley consensus map (Qi et al., 1996). The bars indicate the regions on chromosome 3 that are associated with FHB resistance. The key indicates the mapping studies conducted to identify the QTL and the LOD score associated with that QTL.

 

    Future Research
 TOP
 ABSTRACT
 INTRODUCTION
 Nature of the Inheritance...
 Molecular Markers and Maps
 Wheat FHB QTL Mapping
 Barley FHB QTL Mapping
 Do Wheat and Barley...
 Future Research
 REFERENCES
 
Significant progress is being made on the identification of molecular markers linked to FHB resistance genes. This molecular marker information will be valuable in determining the location of FHB resistance genes and clearing up questions related to the inheritance of FHB resistance. Additional research needs to be conducted to determine the number and location of QTL for FHB resistance. Cooperation and coordination among research groups including exchange of germplasm, mapping populations, molecular markers, and molecular marker information will facilitate validation of FHB resistance genes and associated markers.

In both wheat and barley, better sources of resistance need to be identified and mapped. In barley, the resistance identified so far seems to be largely associated with morphological attributes of the plants. In wheat, most molecular marker research has focused on Type II resistance (especially Sumai 3-derived genes). The current sources of resistance are desirable initially, but other types of resistance and other sources of resistance also need to be identified. This is particularly important since we would like to combine FHB resistance genes from different sources to produce transgressive segregants with a higher level of FHB resistance. In wheat, identifying molecular markers associated with genes for resistance to FHB in addition to Type II resistance is the goal. However, this may be difficult because of the greater environmental variation which may be associated with the phenotypic evaluation of resistance other than Type II resistance. In barley, identifying sources of resistance that are not associated with deleterious phenotypic traits is the goal. As these new sources of FHB resistance in wheat and barley are identified, they need to be mapped to identify potentially new QTL for resistance.

Confirming resistance QTL is important because many loci have been identified from similar sources of resistance, and many have not been consistent across environments. Independent confirmation of each QTL is extremely important before breeders use the markers to conduct marker assisted selection. The University of Minnesota barley breeding program is simultaneously confirming FHB QTL and breeding for resistance. In other words, lines from the mapping populations that contain putative QTL regions are used for the next round of crosses. The subsequent population that is derived from the cross is used to validate the QTL of interest. In this fashion, it is possible to conduct phenotypic selection for resistance while confirming QTL of interest.

As molecular markers associated with FHB are identified, how should chromosome regions to be employed in marker assisted selection programs be chosen? Several criteria should be considered in choosing chromosome regions to emphasize (de la Peña et al., 1999). Markers associated with QTL with the largest effects should be chosen. These markers will be closely linked to a genomic region with a gene or genes with large effect(s). Regions carrying QTL that are significant in multiple environments and/or in several mapping populations should be emphasized. Genes for FHB resistance linked to genes for correlated traits should be avoided, because genes for correlated traits can confound selection for FHB resistance genes. In addition, it is necessary to determine if coincident QTL are the result of tight linkage or pleiotropy. In the case of tight linkage, screening large numbers of recombinants may be necessary to break up the linkage. If pleiotropy is observed, the gene may be undesirable if both resistance and an undesirable trait are conditioned by the same allele.

Breeders would like to be able to use the same markers on different populations. At a minimum, breeders need markers that can be used for selection in populations carrying the same source of resistance (e.g., Sumai 3). The problems encountered in using markers across different populations should be addressed. Characterizing the parents in a cross addresses some of these issues, but the situation becomes more complex when three-way or four-way crosses are involved. Dudley (1993) described several factors that should be considered in determining if a marker can be used for selection in two populations: (i) the marker must be polymorphic in both populations, and the QTL must be segregating; (ii) the linkage phase of the marker and the QTL must be known in the two populations; and (iii) genotypes of other QTL can have an effect (background effect) on the magnitude of the effect of the QTL for which markers are being used.

The use of molecular markers for FHB resistance breeding provides another tool for the plant breeder. To make marker assisted selection feasible on a large scale for evaluation of many breeding lines from many populations, markers need to be developed that can be readily used by breeders, including markers such as SSRs, sequence tagged sites (STSs), and single nucleotide polymorphisms (SNPs). In addition, breeding programs will have to develop the capacity to evaluate molecular markers in large numbers of breeding lines. As breeding programs become more automated and markers associated with FHB resistance are identified, breeding schemes to employ these markers will need to be developed. In this issue, Van Sanford et al. (2001) discuss proposed integrated systems for the development and utilization of molecular markers in marker assisted selection for FHB resistance.


    ACKNOWLEDGMENTS
 
We thank Carla Otto and Shahryar Kianian for providing information on the research with Triticum dicoccoides derived resistance and Nora Lapitan for providing information on mapping FHB resistance in barley.

Received for publication April 15, 2000.


    REFERENCES
 TOP
 ABSTRACT
 INTRODUCTION
 Nature of the Inheritance...
 Molecular Markers and Maps
 Wheat FHB QTL Mapping
 Barley FHB QTL Mapping
 Do Wheat and Barley...
 Future Research
 REFERENCES
 




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