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Figure 4. Log-of-odds (LOD) plots of putative quantitative trait loci (QTLs) for Sclerotinia stem rot resistance using data from (A, solid line) 2003 field, (A, dashed line; B, C) 2004 field, and (F) 2005 greenhouse in Michigan for the PI 391589B x IA2053 population. The LOD thresholds for P 0.10, obtained from 1000 permutation with the 2003, 2004, and 2005 data were 3.0, 2.4, and 3.0, respectively (shown as dotted straight lines in A, B, C, and F). For Kottman x PI 391589A populations, the putative QTLs were based on (D) lesion length data and (E) severity data obtained in the greenhouse in Ohio. The permutation-determined LOD thresholds for P < 0.05 were 1.6 and are shown as dotted straight line (D and E). 1-LOD and 2-LOD support intervals of each QTL are marked by thick and thin bars respectively between the linkage map and the plot. Map distances are in centimorgans, and the linkage groups (LGs) are named according to Song et al. (2004).
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