Chrs Accession Overgo Type Forward primer Reverse primer SNP interrogation primer Chr1 AY110314 CL24410_–1 SNP TCATCCTTTTGCAACCACTACTCA GCATAGATTGGGTTACCAGTTGGA ATCACCATGAAGCAAGCA AY110401 CL809_1 SNP TGCACCTGCTCCACAAGTACAG CGTAACGTGTCATTATGTTCTCCG GTCAATGTTGACGGCGGT AY108650 PCO072650 InDel AGTCGCAGAGCCACAGGTTC AACATGGAACAGAGGCAGACGTA – AY103844 PCO132874 InDel catactgaagggaacggacgac tgcaactgagttcagaacagtaagc – AY107207 PCO128140 InDel agatcatccacagaggagaccatc aagcagatgcgcatatcaatgag – AY109929 CL4401_1 SNP TCAAACTGTCTGAAGATCCCAATG TTGACTGCTGAACCACGATTAGAA AAAAAATCGGCGTCTCTACT AY110052 CL33106_1 SNP TTGTTTACGAGGATGTTGAGCTTG GAACAACAACTGCGAGATGGC AAAAAATATCGCCGTGCCCGA AY110028 CL302_1 SNP GAAAACAATCAGGGAAGAGGAAGG GTTCACAGCACCAGCATTTGTTAC AAAATCAGATCGCATTGAACACACT AY106592 CL14065_1 InDel attttgatgggaaacagtccttga ccaaatcctaaagacactgccatc – AY106736 PCO116807 InDel GACAAGCAGGATGAGAGGAAGAAG GCACAGTCTTAAATTGCACACCAC – AY110640 CL833_1 SNP ACAAATTCTACAGACACGGGAGGA AATTGCGCTTCGAATAGACTGAAC AAAAAATAGAGTTAGACACTCAGAC AY110632 CL5778_1 SNP ATCAAGACCAAGGTGCTCGTCT GCACACCTTCTGAATCCTTCAAGT CCAAGGTCCACTTCACCGC AY110393 CL5132_1 SNP ATATTCATCGTCGTCGTCAAGCTG GACCCTCCAAGATCGGACCTC CTACAAGTTGCAAACCATGGAAAT AW400087 si707051B04 InDel AAGACCAGAGAGAGCCTGCAGTTA ACATATAGTTGAATCCGCAGCTCA – AY108090 CL62610_1 InDel agctggttcctactttggctcttt ttacctactgagcgaatggtagcc – AY110330 CL946_1 InDel GCAACGACGACTTACCAAGAGTTC CTCATGCGACAGTAGGTAGGAAGC – AY110241 CL8900_1 SNP AACATCACCAGGTTCAGCTTCTTC TTCGGAAATATCCGCACTAAAAGA AAAAGGTTGACTCTCTTTTACATCC AY112354 CL34571_2 InDel TTTCCCCACCAATACAAACATCTC ATCATCAGCGTCCTGAAAATGTGT – AY106088 PCO099462 InDel cggagaccggtagaggaaattaag tttttgcgagacataaagtggtagtg – AY109646 CL1599_-1 SNP GGGGACGACACTGATACTACTGCT TTAACAACAACGGTTGGACACTTG AAAAGTGGTGACCACGACGACAG AY111680 CL11621_2 InDel TACCACATTCAGGTATTCGGGTTC TAAGCCAAAGATCTTGAGGGGAAG – AY109678 CL18174_1 SNP CGGACCAGACAATATTCCAAGTTC CTTTCCCAAATAATTCGTGGTCAA AAAAAAAAATTCAGGTACATGACGGAGACATC AY110396 CL18635_1 SNP AACCATACAGTACAGGAGGGTCCA CAAAGGTTGGATATCCCAAGTGAA CAAAATGCTTCGAAGCAAGCC AI855190 si603009F08 SNP AGATGTCCAGGTACTTGAGCCG GAGCCTGTGGCTGGAGAAGAT AAAAAACCTCACCGAGCTGCC AY112092 CL14065_1 InDel GTGAATAGCTTCAGTTCTGCGTGA GTCTCCTCAGCTTGACTCTGGC – AY109499 CL2801_1 SNP GTTCTTTCCGTCGATGTATCCCT GCTATGCAGAGCCTCCTCGT AAAAAAAAAAATAGCGGTTGATTGCAGATTG AY110566 CL45690_1 SNP ATCAGGTTGATTTCACAGCAGTTG CAGCTCAATCATCGAATTCTTGC AAAAAAAAGATGGCTGCTCTCCAGGTA AY110296 CL11152_1 InDel GCGTGCTGAGACTTACCTGGTATT AACGCAGCATAATCTGGAAATTCA – AY104360 PCO094248 InDel GATGGAATAGCTGGCATCCATAAG ACAGCTGAGGTAAGCACAAAGTGA – AY111153 CL12437_1 InDel CCCTTTCGGTAGAATCAAGGATCT AGCCAAGGCAGAAAGTCCAATATC – AY107847 PCO116807 InDel gagaagacccactactcagggacc aatacacagatcgagggagcagag – AY111834 CL67476_1 InDel CATTACACACGTAGGCATCAAACC TGTGAGATGACGAGGATGAGACA – AY110356 CL22447_1 SNP GCAGTGGCCATTCTCGTAGTATTT AGTCTAGGAAACACTTGGGAAGCA GTCTTGACGAACCACCACT AY110191 CL21485_1 InDel GTAGAGCGTGTAGTCCGTCACCTT AATCCTCCTCCTCCAGCCAC – AY110159 CL11942_1 SNP AGAAAGAGGGGAGCATATAAACCG TCACGTGATCTGAAGTACCCATACA TTCTGCATCACTGGGGAGAC AY110313 CL31053_1 InDel TGTGAACATCTTGAGCTTCTTTGC CGACATTGGATACACTGAGGAAGA – AY110349 CL11942_1 SNP AGAAAGAGGGGAGCATATAAACCG TCACGTGATCTGAAGTACCCATACA AAAAAATTTTCGTATTGAATTGGTTGCAAG AY109506 CL7587_1 InDel GCTCTACTCCAACCTCAAGGACAC AAACATAGTCATCGGCAGGACAGT – AY110452 CL23944_1 SNP GTCGAGGATTACTCTCCCTCCTGT CATCGCAACAACAGGATCATAGG CACCGGATGCCAAGCTGTT AI665421 si605011A07 InDel GTGAAGGTCTTCCACCACGTATTC GATTCTTCGGGCTGATAGTACCCT – AY110019 CL471_1 SNP GTATGGGAACTGGCAATAATGTGG GAAACTGGGGCTAATAGCAAGCTC AAAAAAAAAAAAAAAGAATCAAGGGTTCTAAGTACAAAAC AY108625 PCO087393 InDel CAAACTGTTGATCTGGGTGTTGAG TGGCAGTTGACACTACAGAAAATCA – AY111936 CL22280_1 InDel GTCTCTGCATCGGCATCATAATC TTGGTTTACCGAATCTCACCTCAT – BE639426 si946033A04 SNP AGGTACTCGTCGGAAGATTCTTTG CTCCCTCCTGACCACCTCACT ATTTATCTGATCATATGAGGTATTGCCATTT AY108136 PCO095183 InDel ACTCCTGACATTCCTGAGATGGAG GCAAATGTTTGCCCTAAGTGTGTC – AY109834 CL7866_1 SNP TACAGTTTGCAGGAGCAAGACAAG ATTTCAGGTCCTTCATTCCATTTG AAAAACAAATTCCGCACAGCTGAATCAATA AY108778 PCO075654 InDel ACTGGGCCACTATGAGATTGTAGG ACATTTTGCACGCAAATAGATCCT – AY110426 CL31361_-2 SNP GAGATGCCGTAGACAGTAACAGCC AACTACATCAACGGCAACGTGTC AGGACAGCTGAACCGTATGATGATTGA AY110479 CL16056_1 SNP GGGCTAGACTGCTGAAGGTAACAA ATTCCAAGTATCAGTGCCGAACTC CAAAATCAAGAAGAATCTAATCATCAGCTAA AY106606 PCO135617 InDel agacgatagcattggatcctcttg gcatccctgcttaaagagtccata – AY110160 CL7400_1 SNP ACACCTCTTTGACGAACCTCTGTC CAAGGACCTCATCCATGGTTTC AAAAAAAAAAAATGGAACTTAATGAGGTGCTTTA AY111767 CL62610_1 InDel gatcaacgtcaaggatacgtgctc ttagctagcgaccgtggtactcat – AY110983 CL778_1 InDel GCTAAGGCAGCACAAATGAATCTT ACCTTAGACCGTCTTCGGCG – AY109916 CL11745_1 SNP GTTATCAAGAGGCTGAAAGTGGGA GTGTCTGATTCTGTGGTGGCTATG GAGCATACACCACCTTTAG Chr2 AY108849 PCO091677 InDel AATCCGCTTTCCTAGCTCTAATCG GAACAGCCTTATGTTCTTCTCGGA – AY109692 CL301_1 SNP ACAGAAGTATGCCATGGGCTAGAA GCTCACTGGAACGTCTTTCTTTCA TGGTCCTCAAAAGTCCATTCATACTTG AY109603 CL18778_1 SNP AGCCTGTCCTTCGTTACTGACATC CATCTTGTGGGTTTGGTGCAG AAAAAAAAAAATAATGCTCCTCCACATCCTGC BE640649 si945021E10 SNP CGGTATGTCTCATTTCCTATTGCC AGCAACAGGCTCTGGTGTTATCTC AAAAAAAACCGGTGAGGTTCACTAGTCATTA AY109516 CL5703_1 InDel TGTCGTTTACGGTTACTGGTCCTT ATTCCATGCATTCATCCTGACAC – AY112075 CL52019_1 InDel AATGCTGACTTGTAGAGGGTGGAG GCTTGGTATGAGGAGGCAGAAAAT – AY112131 CL12768_1 InDel TCGTCCTCCGCTTGTTACTATCTC CAGCTTTACGCAACTACAGAAGCA – AY106040 PCO125510 InDel AGCGACACTTTCTCCAGTTACCAC GTAACCTCCTTTGATGTAGTCGGC – AI745852 si605074C02 InDel aagtcctcaggaatggtcagtgtc tttgggagctgctaggattatcaa – AI920398 si603020H12 SNP CTGCTTTCATCCATCACAATTCAC CTTCAAGGAGATAAGGGAGCGACT AAAAAAAAAAAAAAAGATCACGTTAAGAGAAACAAA AY104214 PCO099155 InDel CTGTAATACAATGCGTGCGCTAAG GCCAGCAAGATCATAATCTCCATC – AI691686 si606023F08 InDel AGTCCCGACATCATTGTGACTTTT GAGGCTGGAGTATTCTTTGGCTTT – AY110266 CL17243_1 SNP CCCTCTTGAAACTAATACTGCCGA GTCAAAGAGGTGATCACAGTGGTG TTTGCAAGGTAGAAATTACATAATC AY106712 PCO129934 InDel CCTTCGTGCTCAGGTACTACGTCT GCGTTACAAATATGACATTACAAAACCA – AY103590 PCO098412 InDel ggtcgatttgcttctgagttgttt tgttctatgtgtgttttcctgtgga – AY107218 PCO140184 InDel actacgaatccagcgacaagaaag acctcatttatcaggctgaaagca – AY111434 CL58207_1 InDel aacaagatcagatcggcgaagtag cttccccataaatgcaatccataa – AY112466 CL10221_1 InDel TTGAAGTTCTTGTAGAAGTCCGCC GGCATATGGAGTACAAGGTTGAGC – AY110485 CL1980_2 SNP CAAGATTGAGACTGAGCTGACCAA AAGCCTAATAGGGTGAGTTGGAGC TGCACCACAAACCCCTTTTCAG AY104386 PCO096835 InDel cgagttcgacaccagctacatct gacgagcgtagtgcaagatgatta – AY109687 CL45878_1 InDel TATAGCATCATTGCCATCACGTTC GAGAGAAGAGAAGCACCGCAAC – AW681281 si707094H09 SNP CAACCATACAAGTTTCCTCTCGCT ATGACGAATTTGCAGATCATTGTG AAAAAAATGCAGTATTTATTTCGTAT AY110336 CL54827_1 SNP TGACAAGTTTATCTGACGGAGGCT GGAATTATTCAAATTGCGCAGAG AATTCATCCATCGGGCTCTCAGAAA AY105915 PCO131593 InDel GTGCATCAAGTTCTCTCATCCCTT TCCACTCTAAACATCTCTCTGAGGC – AY109981 CL18929_1 SNP CTTGCTGCATCTCTCACATCAAGT TCTCCTTTATGCAGTTCACCAACA CAGAGTACTACTTCTCTAGGTATTC AY108804 PCO063114 InDel GGTGTGACAAATTTCAGCAGTACG TTTTTATCAGCAAACAAGCAGCAG – AY110410 CL7336_1 SNP GGTCTGTAGTGACACGCTGAAGAA TGTTATTATACGCAACATGCGGTC ACGCGCCTCTTCTTCGGT AY109722 CL2887_1 InDel TGCAAAAGAATTGGTTGTAAATGG AGGCAGTATTCAAAGGCATTTCTG – AY109917 CL13558_2 SNP ACTGGGAGTGTGCTAAATGAGGTT GGCGATGTTGGAGAAACACTATTC AAAAAACCATGCTCTTCCTGCGACTA AY109583 CL18551_1 SNP TCAAAGTCTGATTCACGAGAGCAC CCACCTTACAAATCTCTTGCTGCT TGGATCTTTGTTTGCAAGATGGGC AI668346 si605031A07 SNP CAGCCCTTATTTCATTTCCATCAG TGATGGTAGATTTGCCAAAATTCA AGGTGGCCTCTTATCATC AY109645 CL4356_2 InDel AGCATCATCTTTGAGGTTACCAGC CTGCGTTTCTTCTCCTGTTCATC – AY107622 PCO102097 InDel atttcatttttcttccccctcttg atggatcaaacggatctttaagca – AY109575 CL1708_1 InDel CTACATCAAGGACGACAGCAAGAC TTGATGGACATACTAACCAACCCC – AY109592 CL34788_1 InDel AACACTTGCCAATGACCAATCTTT TCTAACCTTGTCAGCCTCAAATCC – AY110467 CL42453_1 SNP GATCTTCCAATCTGGCTGTTCATT AAGTTCTACGTCATTGGTGGGAAA AAAAACCCCAGCCATGAACTGATGTATA AY111236 CL31103_1 InDel TGCTTGTTTTGTTGCTGATCCTAA CTTCTCAAGGCCGAGCAGAC – AY109586 CL860_-1 SNP TAAAACTTTCGTGGGGTTACCCTT CATTCAATCGTTGTTTGCATTCTC CAAATCTCGATGACAGAAACAAACG Chr3 AY109549 CL1501_1 SNP AACTCAACGTCCTCTTCATCAACC CCATACAGTCCTGCAATTCTTGG TCCCTGTTTGTTAGTAATGCTGTTTT AY107363 PCO107756 InDel AAGAGATGACGCCGTGAGAACTAC GAGGATGTGTTTTGCTGGATTCTT – AY109870 CL2099_1 SNP AGGAACTGATCCAGAAAGCTGCTA AAGCATATTACACCGTATCGGAGG AAAAGCAGCAGGTGGCGGA AY110403 CL5194_1 SNP CGCTGATGCCTGTTAATAGTGAAG ATGCAACCGGAAATATGTACTTGA CCTTCCGTCCACTGCACAT AY108004 PCO068796 InDel CGTTCTAAAATATCCGGTCTGCAT CTAGATCAGATCATGTTTGCACCC – AY106948 PCO141323 InDel ccaggatgcttccttcagtacagt tccatatatacacatgggcaactga – AY110151 CL4217_1 SNP AGGCATGTAGGAATTGACCGAATA TTACATCGTAAACAACCAGACCGA AAACAGCACCAACAAAGATCATCAAA AY110297 CL25043_1 SNP CCACCGTACATAGAAACAGTGTCG CTGTTATCTGCCATAAAAGGAGCG CTCGTACAGAGGACTCAGCTC AI714716 si606017F01 SNP ATCCTAATGCTCACCACCGTAGAC AAAACAAAGCTGGAGGCGACTT ATTATTCATGTTGGTGAGAATTAGTGGTAG AY110352 CL12989_2 SNP CATATCACGCACACTACCACAACA TTCTGGAACTACCGAAGAAGATCG AAAAAAAAGATGAAGCTCAAGAAACAATACATG AY112215 CL7356_1 InDel CAGGCAAGCTGCTAGAACTTTAGG TCCAGTCGTCTCAACTAGTGTTGC – AY111507 CL7343_1 InDel TGGTTGTTGGTAGCACTAACTGGA CAGAGGGAGTATAAACGTTAGCTTCAA – AY111541 CL56108_1 InDel TGCTTCCAATTCCAACCAGTAGAT CGGCACGAGTGTAAATCTGGTAAT – AW179494 si618046E03 InDel ACCTCATCTACCTTGCTCATCAGG TAGCCCTAAAGCAATGCATCAGTA – AY106230 PCO119904 InDel CACATGGTACAAGGAGAACAGGTG AAGTTCTCGCAGTGGTCTTGTTTC – AY111296 CL62634_1 InDel TGAACACCTTCTCTTCGAGGTACG GCTGTAGGAATTCGGCACGAG – AI770873 si606059F03 InDel GGTGGGTTGGGTTTGACTACTATG GAAGAAGAACCGCAGTACAAGGAC – BE639846 si946038G12 SNP CTCCTACATCCTCGCTACGGC AGAATCACCAACCTCTCAGCACTT GTCTTACTGCACTGATGGG AY105347 PCO089398 InDel gtggccaactatatccagaagacg acagattaaagccaaacaaaccga – AY110055 CL10277_1 SNP TTTGGAACCCTGCATTATACACCT GAAACAGCAGTGCAATACCACAAC CCAAGTAGGATACACCTGTCG AY110812 CL13054_1 InDel acactcaaatccctccaatccata ttgctgcgtcttgatgatctgtat – AY111125 CL6928_1 InDel GGTCAACGTCGGGAAGAACAC CGGGTGGCTTTTGAATGTAAATCT – AI770795 si606058D10 SNP TGCCTGGGCTTATAATACCATCAT GGAACTTCCCGGTGCTACTAGATT AAAAAAAAAAAAAAAAAAAAAGGTCAAGTTGTTAGCTTTG AI920617 si618016E09 InDel TTCTTCCACCTCTACTAGGCACCA TGTTCAAAGAATGAACATGATGCG – AI745823 si605077F08 InDel GTCGAATTCTATGGGAACTCGTCA CTGCTGCTTCGTCCCTGATG – AY107303 PCO142509 InDel TCAAGGATTACTCCAGCTACGTGA GCACGAGCTAGTCTCGAGTTTTT – AY104511 PCO117256 InDel CTCCCTTCTCAAACATCAGGAAGA TCGTCGACTCAAACTTTATTCCAA – AY105849 PCO098078 InDel GAAGGGTTCATTTGATGCTGAAAA TATTACAGGTGTCCCTCGGTTGTG – AY109934 CL64932_1 SNP CGTACAACTTCACCATCAGCATGT CAGGTCCCGTTCTCGAAGTG AAAAAAACCATCAACGACCTGGAGC BE639338 si946021A07 InDel GGAACTAGCCATCTAGTTTGCGTT GAAATGAACATATTAGGCGAAGCG – AY111254 CL29988_–2 InDel GGAACTAGCCATCTAGTTTGCGTT GAAATGAACATATTAGGCGAAGCG – AY110567 CL7839_1 InDel GAAGTGTGTGATGTGTCAGACGTG TAGAAGACACATGAAGCAGCCAAC – Chr4 AY109715 CL333_1 SNP GTTATCAGCGACTGATGAATGTGG CAAAGTTTTATGATTTGAAACGGGA AAAATATGTGGGGCTAAGTCCGGT AY107692 PCO146629 InDel caaagttcattgaatcggtgaaaa ctgaaacttatttgctcacctatgatct – AY110398 CL736_1 SNP CGATGGTTGTTGCTTTCAGTGTAG ATTTGTAAACATGGTTGGCGTTTC TGTATCACTCATGTTAGTTTGTTAAAAA AY110253 CL871_1 SNP TACTGGATCCTCAAGAACTCCTGG AAAGGTCATGTTCTTTGCATTCGT AAAAAAAAAAAAAAAAAAAACACAAATCTTCAGATAAAGC AY110573 CL1596_1 SNP AGATGCTCAACAGAATGTCCATGA ATAGCGTGTTTTACATGAGGACCC TGCTCACACCCATGATGTTACC AY110290 CL17864_1 SNP ACGATTGCTCAGCAGCTCTAATCT GGGATCAGTGTACGGGTCAAATAC GAATAGAAAGTTAGTCAACAACTTAAAAAA AY110872 CL65845_1 InDel actcaattaggacaagtgcagcct acgctcatactggcatacctcact – AY110562 CL26590_1 SNP GCTACTATTGACACGAACGAGGGT AGATGTACAAGCTTGGCAAGAAGC AAAAAAAGAGACGAGTACGGCCAC AY110355 CL11612_1 SNP GGAGGCAAGTTGATGGTTCTTATG TCGCTGTTCTCTGAACAAGCAAT TGTTCAACTGGTGGAGCCACA AY110310 CL4235_1 SNP GGCTGTCCACGGTCAAGAAC CAACCCAATAATGCTTCATCCTGT ACTGCAGGACGGCAAGATCAT AY108440 PCO119336 InDel gatcatctccccattgttcttgtc catattctatggaacactgcacgg – AY109534 CL50733_1 SNP GCCTGCAGATGGCTACTGAACTAT TTGTGGATGGAAAGCATGTAATGA GGGCTTCCTCGCCTGATGAATTT AY110185 CL32627_1 SNP TTTCAGGATAATGGCCTTGTAGGA GGCGTTCAGAATATAAGCCAGATG GGCATTCTTGGTATTCTGAAAAAA AY104784 CL32627_1 InDel gagaagaagactaacggcacgaaa gtgcgtctggtacacaacacaag – AY112127 CL11712_1 InDel ATCAAGCACCTGAAATGCTACACA GTTTTAAGCAGTGGGTTCATGTCC – AY110631 CL19053_1 SNP CCTGACAAGGTCCTCTGGTAGCTC TCATGAACTTCCTCGAAGAGAACG AAAAAAAAATACCTGCGCTCAGAAACAAG AY108096 PCO136722 InDel CGAGGAGAAGAAGCCTTACATTGA TCATTCATGTAGCAACGATAACGG – AY105971 PCO076386 InDel AACCTCACCTTGTGGACTTCTGAC CCATACCACATTTGATTATTGCCA – AY110989 CL5869_1 InDel GGTTTGCATTTCAGTATCGTAGCC AGGAATGACGTATGGATTCTCTCG – AY109980 CL10245_1 SNP GAGAAATATGGCCTGGTAGTGGTG CAGTCCTTTCCAAACAGTCAGAGC GTTGATGAAAAACAACTCTTAGATAA AY110949 CL12681_1 InDel TGACTGTTGCTGAGCCTGTTACC GTTTCACTGACTCGAGGGTTCG – AY110170 CL65658_1 SNP CATCTCAACTAGCCGTGAAGGAAG GGTCGCCTCCACCTCAGACT AAAAAAAAAAAATCTCACAGGTACCTATCCTT AY106822 PCO104784 InDel gaagacccagatgatctcactgct gtacaaatcgattgacagtggcag – AY109933 CL27530_1 SNP AAGGACCAAAACCGTTCTCTTCTC GAAGGAGAGGTGGGTACAACAAGA TACTGACCTAGAAAGGTGGCTCCT AY109730 CL2227_ 3 InDel gttggaagtccggagactggat gcaaacataggtcccaaatggtaa AY110064 CL27003_1 SNP TAGACGTTATAGGAGCCCCTCCAG CGTAGGAAACCAACCCTTTCTTG AAATGCGTAGCTCATTCTTGTGG AY110231 CL852_1 InDel GAATAAGTCGTACTCCGGCACAGT CCATCTAGATCTCGTGCTACCGAT – AY108514 PCO088312 InDel CTCTGTTCTTGTTTCCAACGGACT AGGAGCTTGGCTCTCTTGAAACTC – BE997321 si947017G02 InDel AGCCTCAATCTCAGAAGAAGAGCA CCGATCTATCAATGTGTTTGTGGA – AY106414 PCO109372 InDel tgtgacacaccagcaagtcctaat tatgaggtcacatctgctatggct – AY109668 CL6375_1 InDel GATGTTTGCTGGTTTGTCTCTCCTT TTAACAGCTTTTGCGACGGATAA – AY109859 CL6375_1 InDel ACGCTAAAGACAAGCAACCAAAAG CCATGTTCAAGTGTTCAACTGGTC – AY109611 CL37807_1 SNP CTACCGCCATACTCCTGTACGTCT TGACAAGGCAAAGCACAAATTTTA GGACAGTACAGATGTTCATCAGGA Chr5 AI676903 si605046E08 SNP CGCTTGTCAGTCTAATACGCCTCT GTCCAAGGCCTGATGTCAATAATC AAAAAAACATGGATCTGCAGGATTC AY110625 CL1125_2 SNP AAAGGTTGAGTTGCTTGGTGAGAC CCCACTAATATCAACTCGGCAAAG AACCATTACACCACTCCCATGTTCC AY109758 CL1976_1 SNP CACATCTACTTCTGCGGTTTGAAG ACTGCCAAAAGCAACTGCAC TCGATTCAATTTCAATCATGTGTTTGTCTCC AY111819 CL21419_1 InDel gcagtagaacccgatcagaaagaa atatgtcaactctccccttatgcg – AY106472 PCO062666 InDel ccacacataaaacacagacccaga ttttgacacacaaagcagcaagat – AY109733 CL5075_1 SNP AGGGTTTCTGTTTAGGCAGTTTCC ACGTGAAACGATGAAATTGAACCT GGATGAGACTTAATTCTGGTTTGACTC AY106398 PCO135705 InDel GCTTTCCAGAACATAAATTGGTGG TGGTAACAGTCGTCAAGTACCACAC – AY111142 CL9565_1 InDel AGTAGATCATGCATCCATCGTCAG TCAAGGAAGGTGAAACCATTAGGA – AY109606 CL4591_1 InDel ACAACAGACTCTGACAGCTTGCAC GATTCATTCTTCCGGGTTGTACTG – AY109995 CL9999_1 SNP CTTTCCTTCGTAGCCTGTGCTAAA CCAGATGACCGTGTTGAGTATGAG AAAAAAAAAAAAAAAAGCATATCACATTTAGGCCC AY104079 PCO134626 InDel AGGCAGTACAGAAGAGGAGCAAGA AGGGAGTACATCGCAAGTAACAGC – BE639933 si946044B06 SNP GTACAGACATACGAGGGGCACAG CACGAGGTTAGTTGGTTCTGTGTG TGACAACCTTCTGCACAT AY110906 CL14503_1 InDel GCAACGTCACTTCAACAGATTGTC CAAACAATGAGGCAGAAGTATGGA – AY105029 PCO082331 InDel ATCAAGGCCTAGGTCAGAACTGTG TTTCTGGGACGGAGTACATACCAT – AY105906 PCO103687 InDel accctgtctacttcttgacgaacg agacagacagacagacaccaggaa – AY109532 CL1742_1 SNP GGACTATTTGGTGGATTTAGCAGG CGAAAACTCTATGTTTAATTGACACCT AAAAAAAAGCTGCGTTGTCCTCTCTATATAT AY109682 CL2492_–1 SNP GCTGTTCATGTACCAGAGCTTTCA AGATGGATGTACAGAGCTCAGGCT AATGGATCCGGACGGGGCTC AY106487 PCO060271 InDel GCTTTCCAGAACATAAATTGGTGG TGGTAACAGTCGTCAAGTACCACAC – AY108049 PCO078116 InDel CCTGATCGAGCTCAGGAGGAT AGTATTCTGGCAAATTCCCCATCT – AY112581 CL11475_1 InDel GCAGAGAGCATAGGTGATCGTTTT CTGCAGTGAGTTTAACAAGACCGA – AY105069 PCO099796 InDel TGGGTATGTTACAATTCCTGCAAA AGGATGAAGAAGCTGTTATGGCTG – AY110825 CL16923_1 InDel gccactgttgctttcatacttgtg aaccagtggcaaatatccgataaa – AY110063 CL863_1 SNP TTTCAGGTATTGTGTTGTCGTGCT ATAACATCCGAGTCAGAGGAGCAG AAAAAAAAAAAAAATGGATGCATCGAGTGAGTC AY109938 CL19962_1 SNP GACACACAAGTTGCGATCCATTAG CGATCAAGCTTTTGCCATTCTCTA AAAGGGAACTCTTGCTCA AY105176 PCO111982 InDel agcacactgatgcactaatgaagg aacatcagaaaccacctaccagga – AY110369 CL10716_1 SNP CAGATGTAAGCACAGGTGATCTGG GGTAGAAGGGTCTTGGAGTGGAGT AAAATCTTCAGTACTATGGTTAGCATTGGTA X64446 siX64446 InDel CTCAAGGTGTGGTACGTGGTCAG GGCCATGGCACCAGCTAGTAT – AY110413 CL8857_1 SNP ATCAACACAGTCCTTGTGGAAACA ATATGCTGTTGCCTTCCCTGATTA ACGCAGTACGTCTATCTTGAATTTTTAGTT AY110182 CL16596_1 SNP TGGTCGAACCTTCTTGGCTTACTA GGGTCTTGGCCTTTTAGAATTCAC AAAAGAAGTTTGCAGAACAGGC AY105910 PCO106969 InDel TACAGAGGTTACCCACGAGGATTT CGGAGTAAGACTCAAAAGCAACAG – AW065811 si614062B02b InDel TGGTCTCGATGTTAACCGTACTGA GGCAAATAAGTATTCCCCTCCATC – Chr6 AY106921 PCO069699 InDel AGTTCCTCAACGAAGAATCCACTG AACAGACGGTCGCTTAATCTTCTG AY110100 CL1035_1 SNP ACTAGCAGACTGAACTCTTCGTGGA ATCAAATCAAAGGAAGCCCACAG GTGTGTTTTAAAGCTTGATGCTATATAATA AY110213 CL1225_1 SNP GATCACGTGGTCATTGACAAGAAG GTAACTTCGGTCAACCTCTACCCC AAAAAAAAAAAAAAACCTCATACATGGTGG AY104775 PCO061308 InDel GCATTTCCTGGTGGTGAAGTTATC AAGCTCTTGAACCGCATTAAGGAT – AY111964 CL9771_1 InDel ATGGTACATGCATCACCTGAGAAA CCCCTTCTCTGTTCATGGTTAATG – AY105303 PCO075489 InDel ctcctcatctgggtcaccatct caagcatgagataaactggatgga – AI737983 si606044D05 InDel ATCAGATGTTACCGGTTTTGATGC CATGTCTAAAGGTTGGAGGGAGAC – AY104742 PCO152525 InDel ggcatgatctgaagaagtttttgg agacgtccgaacatctgtcatgta – AY107240 PCO146525 InDel GGGAACTGGATCATTCTAGTCGTG CTTCTCCTGCTCCTACTCCTGCT – AI665560 si605012H03 SNP GAGCACTAGGATGGACGATTGC GTTCTTCAGGAATTATCAAGGGGC AATTTAATATATACTTTGGCAAGAACTGAGA AY110542 CL4202_1 SNP ATGTACATGGTGTCGCAGAACG TCTATCTATCGCCATCGAGCAAT AAAAAAATGGTGCGGGCCGAC AY110435 CL57831_1 SNP GGTGCACCTTCTTGACGAGG ACGGCACAAAGATAATGGGCTAC AATTCAACAGCACAGTCGTTGG AY108243 PCO134814 InDel gagatggcaagaatgatagcctgt aaagagcaaaaacagagagggagg – AY110260 CL26716_1 SNP GCTTCCTGGTAAGGTTTGCTGATA GAGAATTGGCTTTTGGAACATTTG AAAAAAAAATCAACCGTCCCATTTCATTGTTAA AY109873 CL6571_1 InDel GCTTATGGAGATGTTATGCCAAGG GAAGGGAATATTAACACGGCTGCT – AY110873 CL10452_1 InDel TCAATCGATGGTCAGAGTAGGTGA ATTTAACAAGGTGAGGCTGTTGGA – AY110050 CL392_1 SNP CTTCCTGACAGGTACATCGACCAT GTAACTGTTGTTCCGGCGACAC AAAAAAAGATCTGGGCCTATAGAGATG AI737346 si606039C09 InDel ACAGAATAGCTGTGATAGGCACCC GCAATTCGATACCAAGATCATTCC – AY112405 CL10251_1 InDel GATCAGCTCACGTGCAATAACATC ACCTTTGTGCTATAGTGGGAGGTG – AY104923 PCO144363 InDel TGTTTTGCTTCATGACATGTGTGT GCTTCACAGACCAAATTCAATGTTT – AY105728 PCO142478 InDel AAAGGCCTTGAGAAGACAGGAGAT GTACATCAGTTGCATAGGGTCCGT – AY110400 CL15423_2 SNP ATGAAGAGCTGGATTCAAGATTGG CGAGTTGAGTTCAGTTCCTAAGGG CAATGAATGTGTTGGCTGTTGGGT AY104289 PCO114336 InDel CTGTTGGAAATAAACCTGCCATTC TCGCCTAACCTAGACCAACATCAT – AY109797 CL10211_1 SNP CTGGTAAATTGGTAGGGCAACTGA CCTCCCACGACCTCTTCGTC AAATGCCAAAGAAGTGGGGCAATGT AY109996 CL2349_1 InDel ACTCCAGTTTAGGCACTGATTCCA CAGTAGAGAATTGCGCACACCAG – AY106902 PCO068526 InDel TGCTATGACAAATGAATGAGCGTT GACATGTTTTGCGCTTGAAGAAAT – Chr7 BE056994 si945036H05 InDel aggactacaaggataagctggcg ctatctccttggagaccctggagt – AY104465 PCO087457 InDel CTCCCTCAACACACTTCTCAGGAT TATGAGAATGGCAGTCGAAAAACC – AY108063 PCO143084 InDel CATAGCGCAGTTGATGTGTGATGT GATTTTTACACCAAGCGACAGGAA – AW308691 si618080H02 SNP GCAGTTGTTAGCAAGAGGGAACTC AATGAAACTGTCAAAGGAGGATGC TGTCTTCTTCGCGACTTCACC AY109536 CL5684_1 SNP CTCTAAGACGAGCTGCTGAAAAGG TGAAAAGAGAAAGGAGCTGACCAA AAAAAAAAATGTCTATGCACCCACAA AY105589 PCO140163 InDel CTCAGCATTGTAGGCTCGTCAATA AGACAATGTCAACTTGGTTTCTCG – AY110473 CL10705_–2 SNP ATAGGGTCTCACTCTCATGGCAAG CGAAGTTCATATCTTCGGGAATTG CCTTCTCCGTCTGCCAGC AY110576 CL21448_1 SNP TGCTCCAGACTGACAACTCAATTC TACATTACAAACATGGCAGCTGGT AATCCTTATATTTGGGACTAAACTTGT AY112356 CL4745_2 InDel taccccatacattttcctcgctaa ttcacaaaggctctgttgagattg – AY109809 CL29132_1 SNP TTTAGAACTTCTGGTTTTGCTCCG GTGATTCTGAGGAAGATAGCCAGC CAACTGATGCTGAGATACCCTGAACAA AY105254 PCO115023 InDel agtttgcaaatctgctcaagatcc ttgagttcggagtcaggggtaac – AY109968 CL376_1 SNP ACAGCACTCTTCGCCTACAATTTC TCATGCTACCAAAGAAAAGCTGAA AAAAACAGTTGTTCAGTTTGTCCATACA AY110374 CL34066_1 InDel AACACTGTCCGTTCCAGATCATTT GGTTGCTATAGACAAGCACTGCAC – AY106517 PCO071075 InDel cagcatgttcagtccaagtgctac ccccttcaattacattacatgactgc – AI987507 si614054G01 InDel AACCACTTGAATTAACACCACGAAA GAGATGCGAGAAGGGAAGTCAATA – AY107797 PCO101826 InDel AAGTGCTTGATTTCGTTACTGCCT TTTTTGAGACCTTGGAATGTTTGTT – AY109644 CL12102_–1 SNP GTAGGCGGTCTTCTGACTTTCGTA ACAAGGGAGAGAGCTGCCATC AAAAAAAATCGCGAAGGGGACTCC AY108039 PCO102751 InDel ggtgttactggactacggttgagg ttaattcacacagtgcatggacaa – AY110023 CL41684_1 SNP TGACCTGAGCTTTTAGGGTGACTC CACAATTACTATCGACTCTCACGGTC AAAAAAAAAAAAAAAAAAAATATGGTTTCATCCACCTTGA AY110439 CL194_1 InDel CAGGCGCTCCATATATAAACTTCG GCCATGAAATCAGTCTTGAGGTGT – AW267377 si829001F06 InDel GGGATCTACGTACCCCAAGCTTTA CGCTGTCTCCTAAAGAAAACTACACAG – AY104976 PCO136133 InDel gagagaacggtgttctttgacgac cgacagggatgagctatacaaacc – AY103848 PCO061754 InDel atctgccttatcctcaccttcctc caagcaaccaacccagtactacaa – AY109703 CL4455_1 SNP CTACACTAGGGGTGCAGGTGAGAT TCCAATCTCCAAGAGTCTTTTATTCAA GTTATTCTCAGGCACCCTTCTTGCC Chr8 AY111865 CL16874_1 InDel TCCTCAGGATGGTCAGGTACAAG ACCGACACTTGGTTGATGAGAGAT – AY109699 CL7702_2 InDel CAAGGTTTCTTATACCATGCGAGG CAGCCAATCTGATCGAAAAGTTCT – AY111073 CL39692_1 InDel ttccaagagacattacacgcagaa ctcatccatcataactgtccaccc – AY111071 CL51477_1 InDel aagcccacctgatgatacatgact tattagggctgatggagctattgg – AY106269 PCO138212 InDel CCAATTACACCACCGAGATCTACC AACCGCTTAAACAGCACGATTAGT – AW244963 si687017E04 SNP AY110450 CL27631_2 SNP ATGGGTATGTACAGGTACAGGGCT GCATACTGTTTGAGTCCAGCTGTT AAAATGACACATGCAGGTTCAATGCTA AY103821 PCO084551 InDel GGAGTTGGGTTTTGCCTCCTATAC GATAAGCATGCAACAACTTCCAGA – AY109740 CL2942_1 SNP TTGATCAGGATTCGTGTCTATCCA GGACAGCACATAAACCTTGAAATATG TTTGTTGGTGACTTGTTTCTTATGA AY105457 PCO149506 InDel AATGCAGGAAATACAAAGAAGGCA CCATTCAACTTGGAGAACATAAAAGG – AY110032 CL34676_1 SNP CCTTCTTGATCTATTCCCTGCTGA AAACATACCCAATATACCTCCCGC AAAAAAAAAAATGGCTGTTGTAAAAGAGAGAA AY109626 CL1397_1 SNP GATTACAGAGCACAAGTTCGGACA GTGACCATGAACAGCTTGTCGTT AAAAAATTTCAGTTTCTCACCTGAAGGAAAAGAAAG AY108084 PCO147505 InDel TAAATGCCATGCTGAAGATTTCCT TCCAAATGTAAGCTAAGTGTGGTTCA – AY110056 CL10675_1 SNP GTACTCTCCCTTGTTGTAGGGCAA TGGCGTGTCTACCTCTGAAATACA AAAGTTTTGAGCACCTGTATC AY104017 PCO119482 InDel GGAGATTGCCCACATGTACAAGAC GAACATTAACCAAAGAGCACCGAC – AY104566 PCO130617 InDel GATTCTGACAGTTTCCGTCAACCT GGACAACCCGCATCAAACATA – AY109883 CL42920_1 SNP TCTCTTCTTGGTTTCAAGGTCCAC TCCATGCTCCAGTGCTACGATA AAAAAACTTTCTTATCGGTGCCCC AY107140 PCO079694 InDel ggaaggaaaacttctccccctagt ttccctgctgtaaaatatctggttg – AY111629 CL9311_1 InDel ctagtattcgaggaactgagcgga cgttgtcagaagaaatgcagattg – AY110569 CL10335_2 SNP TTTAGCAAGCGAACATGTCTGAAG GTGGTGTGCGTATCAAGAAGCAT TTAAGAATGTACTGTAGTTAAAACTGGAGAA AY110539 CL13530_1 InDel CAGCCAAATAACTGATCTGCAATG ATTCTTTGGTAGCAGCAGGTCTTG – AY109593 CL7515_1 SNP GCCAAGAATGATACCAAAACGAAG CTGTCAATGCAGGCTTATGATGTC AAAAAAAGAGTATGAGGATTATCATGTGGGCAT AY110053 CL2103_2 SNP ATCCTCCTTGGGTTTACTCTCTCG CAAGCTCACCAAGATGTCGGA AAAAAAAAAAAACAATCCCTTCAATCTGGCG AY110127 CL4812_1 SNP GCAGTAACCTTTGTAGGCGACAGT TCAATAGCGAAGCATTCAGTTCAG AAAAGAATGTAATTATGCAATGTAACTGTATGC AY103806 PCO111734 InDel AAGAGGTGAACATTGGTGCTAAGG TTTTTAAGCGCAACTCCAGATGAT – AY109853 CL2096_2 InDel GTAGAGCAAGGCCTGTGAATGG TCAGAAGCAGTTCAATCACACACA – Chr9 AY104252 PCO110637 InDel ATTGCATTAACCATTGATTCCTGG CAAACCACTCCAAACTACATGGGT – AY109531 CL1198_1 SNP CCTGCCAAGAACTGGGAGAAC CACCGAACAGCAGGGATTATTTAC AAAAGCGCGAGATCAGGGG AY109570 CL1864_2 InDel CTCCTTGATCATCTCGAAATAGGG GTGATCACTGATTTCTGGTCATGG – AY107559 PCO061815 InDel TGTTGTAAGAAGCATCCTGTTCCC ATCGCGATGCACTGGTTCTG – AY109816 CL0_–2 InDel GCCATATTTCTTTACGACGACGAC CTTTTAGTATGCGCCTAGCATTGG – AI812156 si605086B11 InDel CCTTGGTACACTACCTGCTCCAGT CAGCATCTTGAGTGCTTACCCATT – AY103770 PCO100327 InDel ATCCGTCTTACCCTTATCCCAAAA GCGCATTTCTAGTTTTTAGCAACG – AW257883 si687063E06 InDel CTTGTGGTTGTTTCTCCTGATGTG CAAGCATATACAGCTTCTGCTCCC – AY109764 CL5759_1 SNP GCTTCTACGTTCTCCCAGATGC TTATTACAATGCATAGCTCCCACG TCTTGGTTAGATTTTGCCTTCCCATTCTGTT AY110217 CL9357_1 SNP CCCACCCGTTGTTTATAACTCTGT ACCAGGGCAAGATCAAATCTGTTA AAAAAAAAAATGGTTGAGGAAAGAAAGA AY109792 CL22067_1 SNP GACTTGCACCTTTTCAGAACGAAC CCAGGGCAAGAATAACTACAACCA TCTTGTACATCTTTCACAACGGTG AW215946 si687046G05 InDel gcctctgtaggatggatgtgatct tatgggcattgttaccccttgtag AY109550 CL135_2 InDel CTTCGATGCAGTGTTCTCAGTTGT AGCATTCGGCACAATTTTGTACTT AY110141 CL39723_1 SNP AACCAGAGAACTGCTGTTGATTCC AAGAGTCCAGGAACTTCAATGCAA ATGAAATGGCCATACATGGCAGAGTA AY109819 CL3318_1 SNP GATGAAGCCTAAGCAAGAGGTGAA CTTCTTTGCAGCCTCGTTAAACAT AAATTTGGATTTACAGTTCATTGTTGTCCTTCT AY109543 CL854_1 SNP ACATGAATCCAAGGTGGAACCTAA TTGTGTCTACTGTCAAATCCTGGC CTTGAAACTCTCCCACGCTCAC AY110382 CL32455_1 InDel AAATTCATCACGCTGATTTGGTTT CAAGGCTGATAATATCTGGGCATC – AY106323 PCO084517 InDel CGAGAACACAGGGAAATCTGAAGT TCCTGCAATAAACTTGTGTAATGTGTG – AY106075 PCO127444 InDel ttcatcaaccagaggaagaggaac gcgtccggacaaactatgctatac – AI901738 si618009H12 InDel GCATCCCATATTCCCATTGACTAA CCATGGAAGTGGGAGATGCTAC – AW216329 si687049E06 SNP CTTGAACCATGCTAAGCTTCATCC ATCGGTTTTGCGAAGTACAAAAGA AATTAACCCTCAAGAGACTTCATATTGAA Chr10 AY110060 CL35548_1 SNP TAGAAAATGGATGACCATCCCAAG TCAGAAGGCACAGGTCTATGAACA ACTACCTTCAGAACGAAAGC AW330564 si707029B01 SNP CGCACTATGAGTCGGCTGAAC CCACTTGGTACTACACACGCATTC GTGTGTTTTTAGTTTATTATTGTGCTA AW225120 si687024F01 InDel GGGAATGTATAGTTTCTGGGCTGA ACACCAATAAAGCGAGTCAAGGAA – AY110360 CL2011_1 SNP TATTTTAAGTTCGGCCTTTCATGC AAGGATACAAGCGAAAGAATGCTG AAATTTCCTGGTTACAATTTATCTT AI795367 si605011H02 SNP GCATGGATCATAATGTTCTCCACA GAGGGTGGATACTTGACTGCTGAT TCGTGAAGCTTCAACATGGCGAATA AY109994 CL768_1 SNP GACGATCTGTCTGTTTCACGAAGA TATGACTTGCCACAAAAGCAATTC GAGGGCAAAGGCAGACAGA AY107726 PCO062847 InDel ATGCAGATGCAGTGTGAGATGTTT GGATCATATGGGATTTCCTGTTCA – AY105746 PCO099975 InDel TTCACACTGATTTTGAAAGGGGTT ACAAGCCATACAATTGTGCATGTT – AY110411 CL242_1 SNP ACTCTACTCCTCGCGTCAATGTTC ACAACGAGATAATTCTGGAGCGAG AAAGAGAGATCGCGGACTGGG AY110248 CL4753_–2 SNP TGTCCTGTTCTCCATTTGTTGTGT CATTGCTAAACACTGGGTCAGTTG AAAAAAAAAAAAAAATAGGGCTGGGGGCA AY112073 CL6800_1 InDel AGATTGCTAGCTTTATTCCGGTCC GACCATCTGGAGGAGTACAGCAG – AY111178 CL5772_1 InDel CAAGGATCGTCACCTTCAACTC CCCATAGTCCATACATACATGAAAGA – AY110514 CL948_1 SNP AAGAATGCTGAACCAAGAGTTTCG CCCAAACTCCAAACTCAATTCAAA GCTTGTAACATTCCCTAATTAATGTAAATTTATG AY109584 CL2436_1 SNP GAGGAGAACAAACTGCTCATAGGC TCCTTCCTACGGTATCTCAGAAAACT AAAAAAACACTAGCCAAACTGTCA AY109920 CL36143_1 SNP ATCCAGTGATCCCCTAAAATCCTC CATACTTTTGGATGACAGTGGTGC AAAAACAAAAGGTTAAGGATTCCGAGCT AY109876 CL1675_1 SNP GTGCAACGTTCTGCTTCCTTTACT TGGAATGGGAGACGTGTCTTTAATA AAAAAAAAAAAATAATGCCATCGTACAAGAATGGATG AY106635 PCO086427 InDel CTAGCTAGGGCTGCCCGTGT GTGCAAGCCGGGAAACAATAC – AY110365 CL38215_1 SNP GCGATGCCACTACAGCTACAACTA ACTCTATGGCAAGACCCATTCAAG AAAAAAACACTGCACCAACACCTG AY109698 CL4149_1 InDel ACGAGCATCACGAGAAGAAGG AAACACACGTAAATTCACATTATTCAA – AY108476 PCO126344 InDel CGGATTTCACTCTTAGGTTGAGGA CCACGTTCTCATCTGGGTTAAAAG – AY110634 CL3121_1 SNP TACTACAACAGGCTAAGGGCGGTA CAGGACGTGCCCTCAAAGAC AAAGCACCTGCAGCTTCATGTT AY106733 PCO107634 InDel ATACCTGCTGGGTTCTTAGAAGGG CAGCCTCGATGAATAGGAACAAGT – AY107822 PCO087182 InDel CAGTTGCAATCTTAGGGTACGAGG CACAATCCAAAATGTTTTACATCCG – AY110167 CL14540_1 InDel CGACATCTAGATCAATCCAAGCAA ACTCGCTTCGACTCCGACAG – AY110016 CL16508_1 SNP GGCTCATCTGGAACGAATACAAAT CCAAATCCCTGAGCTCCAAAG ATGGCACCATATGCCGATG AY109829 CL35744_1 SNP TGACATAGCTCGTCCAACTGTAGC ATGCTGCTATTGGTCTTCTTCTGG CCAATAGTATGCCTCACGATAATCATCAAA

. Bars are bacterial artificial chromosome (BAC) contigs detected by two or more adjacent markers. The BAC contigs associated to unigenes are noted (ctg#). Unigenes that detected several BAC contigs are underlined. Off-frame markers are in italic, and markers that are not listed in Supplemental Table 3 are the framework markers used to assign SNP and InDel markers to maize chromosomes.