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Published online 23 February 2005
Published in Crop Sci 45:748-757 (2005)
© 2005 Crop Science Society of America
677 S. Segoe Rd., Madison, WI 53711 USA
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Spatial Analysis of cDNA Microarray Experiments

Juan Burgueñoa, Jose Crossaa,*, Daniel Grimanellib, Olivier Leblancb and Daphne Autranb

a Biometrics and Statistics Unit, International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, 06600 México DF, México
b Institut de Recherche pour le Développement (IRD), Apdo. Postal 57297, 06501 México DF, México


Figure 1
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  		Fig. 1. Spatial location of blanks in Slides 46 to 49 from Data Set 1.

 

Figure 2
Figure 2
Figure 2
Figure 2
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  		Fig. 2. Interpolation of background (a, b) and foreground (c, d) of the blanks for Slide 48 in two conditions from Data Set 2 [Condition A in (a, c) and Condition B in (b, d)].

 

Figure 3
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  		Fig. 3. MA graph of unadjusted values (first four graphs) and spatial adjusted values (last four graphs) corresponding to Slides 46 to 49 from Data Set 1. Values in the y axis are M = log2(S1/S2) and in the x axis, A = 0.5 x [log2(S1 x S2)].

 

Figure 4
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  		Fig. 4. Spatial location of blanks in Slides 75 and 77 of Data Set 2.

 

Figure 5
Figure 5
Figure 5
Figure 5
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  		Fig. 5. Interpolation of background blanks (a, b) and foreground blanks (c, d) for Slide 75 in two conditions from Data Set 2 [Condition A in (a, c) and Condition B in (b, d)].

 

Figure 6
Figure 6
Figure 6
Figure 6
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  		Fig. 6. Interpolation of background blanks (a, b) and foreground blanks (c, d) for Slide 77 in two conditions from Data Set 2 [Condition A in (a, c) and Condition B in (b, d)].

 

Figure 7
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  		Fig. 7. MA graph of unadjusted (left) and spatial adjusted values (right) for two slides (75, 77) in one condition from Data Set 2. Values in the y axis are M = log2(S1/S2) and in the x axis, A = 0.5 x [log2(S1 x S2)].

 




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