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A Microsatellite Marker and a Codominant PCR-Based Marker for Marker-Assisted Selection of Submergence Tolerance in Rice

^a Dep. of Agronomy & Range Science, University of California, Davis, CA95616-8515 USA
^b International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines

View larger version (26K): [in a new window]   Fig. 1. Plot view (adopted from the output of Genotyper V2.5) of segregation of RM464A (panel A) and RM219 (panel B) in BC2F2 (DX236) plants. Plants 16 and 19 represent parental homozygous alleles for DX202-9 and M-202, respectively, while the other plants are heterozygous.

View larger version (33K): [in a new window]   Fig. 2. DNA sequence of the marker RM464A fragment. The alignment shows the positions of the two RM464 primers and the sequence identity in the RM464A region between DX202-9 and 93-11 (from accession AAAA01003627 in GenBank), an indica line sequenced by Yu et al. (2002).