Crop Science -- Labate 40 (6): 1521 Table BL1

Table 1 Major features of reviewed software programs

Program

Feature
TFPGA ${dagger}$
Arlequin ${dagger}$ ${ddagger}$
GDA ${dagger}$
GENEPOP ${dagger}$ ${ddagger}$
GeneStrut
POPGENE ${ddagger}$ $§$

Diversity

Heterozygosity (observed) ${surd}$ ${surd}$ ${surd}$ ${surd}$ ${surd}$

Expected heterozygosity ${surd}$ ${surd}$ ${surd}$ ${surd}$ ${surd}$

No. alleles/locus ${surd}$ ${surd}$ ${surd}$ ${surd}$

Effective no. alleles ${surd}$ ${surd}$ ${surd}$

Percent polymorphic loci ${surd}$ ${surd}$ ${surd}$ ${surd}$ ${surd}$

Shannon-Weaver ${surd}$

Population structure

F-statistics ${surd}$ ${surd}$ ${surd}$ ${surd}$ ${surd}$ ${surd}$

G-statistics ${surd}$ ${surd}$

ANOVA ${surd}$ ${surd}$

Rho-statistics ${surd}$ ${surd}$

Homogeneity ${surd}$ ${surd}$ ${surd}$

Migration ${surd}$ ${surd}$ ${surd}$

Isolation-by-distance ${surd}$

Equilibrium

Hardy-Weinberg ${surd}$ ${surd}$ ${surd}$ ${surd}$ ${surd}$ ${surd}$

Two-locus ${surd}$ ${surd}$ ${surd}$ ${surd}$ ${surd}$

Multilocus ${surd}$

U-test ${surd}$

Genetic distance

Nei's ${surd}$ ${surd}$ ${surd}$ ${surd}$ ${surd}$

Rogers' ${surd}$ ${surd}$

Pairwise F_ST ${surd}$ ${surd}$ ${surd}$

Clustering

Neighbor-joining ${surd}$

UPGMA ${surd}$ ${surd}$ ${surd}$ ${surd}$

Neutrality tests

${surd}$

${surd}$

Performs exact tests for significance.

Program can accommodate a null allele in the data.

User can specify an inbreeding coefficient to estimate the frequency of a null allele.